View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_39 (Length: 445)
Name: NF0214_low_39
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 439
Target Start/End: Complemental strand, 14066215 - 14065806
Alignment:
| Q |
30 |
tttccttcatcaaaatatatagtgattttgtggaagaaatgtctttattctgttataactactgcttctgtgagcatagcagaaacaattagaaataaga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066215 |
tttccttcatcaaaatatatagtgattttgtggaagaaatatctttattctgttataactactgcttctgtgagcatagcagaaacaattagaaataaga |
14066116 |
T |
|
| Q |
130 |
gtttgagattgttcacatttcatatagtgaaatttgttgtttcctatagacatagtccaaattgggtgaaccaccttattttgatgtgtcttgataagct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066115 |
gtttgagattgttcacatttcatatagtgaaatttgttgtttcctatagacatagtccaaattgggtgaaccaccttattttgatgtgtcttgataagct |
14066016 |
T |
|
| Q |
230 |
gtgaagattaacctgataagtagcaatgataagtgattagcaacctgttagttagttatctagcagtatcagttagttatgaatttcccgcatttctagc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
14066015 |
gtgaagattaacctgataagtagcaatgataagtgattagcaacctgttagttagttatctagcagttttagttagttatgaatttcccgcatttctagc |
14065916 |
T |
|
| Q |
330 |
ttttcagttatgacagttagtagctgatttctcatgtattaataccgcaaaacctctccttcgttcattaatgagcatcagattgctcgttcatatcact |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14065915 |
ttttcagttatgacagttagtagctgatttctcatgtattaataccgcaaaacctctccttcgttcattaatgagcatcagattgctcattcatatcact |
14065816 |
T |
|
| Q |
430 |
tctctgctcc |
439 |
Q |
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| T |
14065815 |
tctttgctcc |
14065806 |
T |
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