View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_low_4 (Length: 621)
Name: NF0214_low_4
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_low_4
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 100 - 525
Target Start/End: Complemental strand, 36991614 - 36991189
Alignment:
Q
100
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaaattat
199
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
36991614
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaatttat
36991515
T
Q
200
aaccataatcataaggtgcatacgtgcaactatattaaaatacaagcccaccaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa
299
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
36991514
aaccataatcataaggtgcatatgtgcaactatattaaaatacaagcccaacaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa
36991415
T
Q
300
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagaaaaagcaa
399
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
T
36991414
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagcaaaagcga
36991315
T
Q
400
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctccagc
499
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
T
36991314
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttacgtgggtgtaccaaagtatactaccagc
36991215
T
Q
500
cattagatcaagtagagatctaaagt
525
Q
||||||||||||||||||||||||||
T
36991214
cattagatcaagtagagatctaaagt
36991189
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 100 - 525
Target Start/End: Complemental strand, 37017054 - 37016629
Alignment:
Q
100
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaaattat
199
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
37017054
tcatttctcaaaataggatcttttgatttatggcctaaagaataaataaacagattcttcaatcttaagcgtaaagctgaatgttttcttgaaaatttat
37016955
T
Q
200
aaccataatcataaggtgcatacgtgcaactatattaaaatacaagcccaccaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa
299
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
37016954
aaccataatcataaggtgcatatgtgcaactatattaaaatacaagcccaacaatgtaatatgatttcagaaacctttcgtttgaaaggaaaatgacaaa
37016855
T
Q
300
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagaaaaagcaa
399
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
T
37016854
ataatgatataaatcaatcaaaagaatgaagaccatagaagcttgtaatatagtttaagtcaatatgactcaccaagtgtggccatcacagcaaaagcga
37016755
T
Q
400
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctccagc
499
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
T
37016754
caattaggcctaccggctgcaccctcagtttttcaatgggatattggtagatattcatgttcttcattgttacgtgggtgtaccaaagtatactaccagc
37016655
T
Q
500
cattagatcaagtagagatctaaagt
525
Q
||||||||||||||||||||||||||
T
37016654
cattagatcaagtagagatctaaagt
37016629
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 346 - 517
Target Start/End: Original strand, 28296159 - 28296331
Alignment:
Q
346
aatatagtttaagtcaa-tatgactcaccaagtgtggccatcacagaaaaagcaacaattaggcctaccggctgcaccctcagtttttcaatgggatatt
444
Q
||||||||| ||||||| | ||||||||||||||||||||| |||| | | |||||||| |||||| |||||||||||||| ||| | |||||||| |
T
28296159
aatatagttcaagtcaaatttgactcaccaagtgtggccatgacagcagcaaaaacaattatgcctactggctgcaccctcagctttccgatgggatact
28296258
T
Q
445
ggtagatattcatgttcttcattgttatgtgggtgtaccaaagtatacctccagccattagatcaagtagaga
517
Q
| |||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||
T
28296259
gatagatatttatgttcttcattgctatgtgagtgtaccaaagtataccaccagccattagatcaagcagaga
28296331
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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