View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_40 (Length: 439)
Name: NF0214_low_40
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 28 - 428
Target Start/End: Complemental strand, 52823724 - 52823324
Alignment:
| Q |
28 |
cagacgtcgcactggatcttcataatatcaaatgtacgtatgatactgaatcattcacttatttccctctgaatcttataataaatatctgaaccaacca |
127 |
Q |
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| T |
52823724 |
cagacgtcgcactggatcttcataatatcaaatgtacgtatgatactgaatcattcacttatttccctctgaatcttataataaatatctgaaccaacca |
52823625 |
T |
|
| Q |
128 |
tccaagacaagaaacaatgaagaagatggtgacccactgttaaatatatacataattgaattaaataatatatttgaacaccttaaattttatctctatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52823624 |
tccaagacaagaaacaatgaagaagatggtgacccactgttaaatatatacataattgaattaaataatatatttgaacaccttaaattttatctctatt |
52823525 |
T |
|
| Q |
228 |
tctcttatgaaatcatcaccctatcatatttatcacacaactctctcttatatctttctctcacaggttatattatacacacctaaacattgtctattgc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52823524 |
tctcttatgaaatcatcaccctatcatatttatcacacaactctctcttatatctttctctcacaggttatattatacacacctaaacattgtctattgc |
52823425 |
T |
|
| Q |
328 |
gatagcatagtgcttgacttggttgtgttttgtttttaggtgcggtgttttatgttgggattatactgccgcatatttacgatgcttattttgtagttca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |
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| T |
52823424 |
gatagcatagtgcttgacttggttgtgttttgtttttaggcgcggtgttttatgttgggattatactgccgcatatttacgatgcctattttatatttca |
52823325 |
T |
|
| Q |
428 |
t |
428 |
Q |
| |
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| |
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| T |
52823324 |
t |
52823324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 428
Target Start/End: Original strand, 25664249 - 25664360
Alignment:
| Q |
316 |
attgtctattgcgatagcatagtgcttgacttggttgtgttttgtttttaggtgcggtgttttatgttgggattatactgccgcatatttacgatgctta |
415 |
Q |
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||||||| |||| |||| ||||||||||||| | ||||||| ||||| || |||||||||||||||| ||| |||||||||||||||||||| || |
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| T |
25664249 |
attgtcttttgcagtagcttagtgcttgactttgctgtgtttcgttttctggat-ggtgttttatgttgggcttagactgccgcatatttacgatgtcta |
25664347 |
T |
|
| Q |
416 |
ttttgtagttcat |
428 |
Q |
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||||||||||||| |
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|
| T |
25664348 |
ttttgtagttcat |
25664360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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