View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_41 (Length: 437)
Name: NF0214_low_41
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_41 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 29 - 424
Target Start/End: Original strand, 88888 - 89281
Alignment:
| Q |
29 |
acgcttctctcatgatttactccatcgcccatatgatttatcgatcatacaaggtccctaattaattgtattcttataatatgacataactttgtattaa |
128 |
Q |
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| T |
88888 |
acgcttctctcatgatttactc-atcgcccatatgatttatcgatcatacaaggtccctaattaattgtattcttataatatgacataaccttgtatcaa |
88986 |
T |
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| Q |
129 |
tgattttggtcatctatattaaaatattccaacaaaagaacactttatttttaagactctctaacaatcactcttttactaactaaaattcatatgattt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||| |
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| T |
88987 |
tgattttggtcatctatattaaaatattccaacaaa-gaacactttatttttaagactctctaacgatcactcttttaccagctaaaatttatatgattt |
89085 |
T |
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| Q |
229 |
ccactattttagataggactaatttccaaaatgtagaatccacattgatttcactcaagagtgagtgttggagagtgttaaaaaagaatgttcctatcac |
328 |
Q |
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| T |
89086 |
ccactactttagataggactagttttcaaaatgtagaatccgcattgatttcactcaagagtgagtgttggagagtgttaaaaaagaatgttcctatcac |
89185 |
T |
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| Q |
329 |
tcttcaatcatcatttgtagtttgagtaatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatactcttattttgttc |
424 |
Q |
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| T |
89186 |
tcttcaatcatcatttgtagtttgagtaatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatactcttattttgttc |
89281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 29525230 - 29525294
Alignment:
| Q |
349 |
tttgagtaatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatactc |
413 |
Q |
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| T |
29525230 |
tttgagaaatgatatttgtacattcattttatgacaacttttgtacaatattctctctcatactc |
29525294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 9985750 - 9985688
Alignment:
| Q |
351 |
tgagtaatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatactc |
413 |
Q |
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| T |
9985750 |
tgagaaatgatatttgtacatctattttatgacaacttttatacaacattctctctcatactc |
9985688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 2855027 - 2854970
Alignment:
| Q |
356 |
aatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatactc |
413 |
Q |
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| T |
2855027 |
aatgatatttgtacattcattttatgacaacttttgtacaatcttttctctcatactc |
2854970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 17167853 - 17167909
Alignment:
| Q |
356 |
aatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatact |
412 |
Q |
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||||||| |||||||| |||||| ||||||||||| |||| | ||||||||||||| |
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| T |
17167853 |
aatgatatttgtacatccattttatgacaacttttatacaaccttctctctcatact |
17167909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 28165126 - 28165190
Alignment:
| Q |
349 |
tttgagtaatgatacttgtacatttattttaggacaacttttacacaatcatctctctcatactc |
413 |
Q |
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| T |
28165126 |
tttgagaaatgatacttgtacaaccattttgtgacaacttttagacaattttctctctcatactc |
28165190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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