View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_low_48 (Length: 417)
Name: NF0214_low_48
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_48 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 417
Target Start/End: Complemental strand, 31168885 - 31168498
Alignment:
| Q |
30 |
taagggccctatagataacatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttgaattcca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31168885 |
taagggccctatagataacatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttaaattcca |
31168786 |
T |
|
| Q |
130 |
ttcataaaggaaacaacgttaagttctgactatttttcaatgattcatttgtgttcatgcaaatatacatcataatttcttactctttgagaatatcttt |
229 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31168785 |
ttcataaaggaaacaacattaagttcttactatttttcaatgattcatttgtgttcatgcaaatatacataataatttcttactctttgagaatatcttt |
31168686 |
T |
|
| Q |
230 |
aagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactgtgagccactggtgccatcacctctgtgcagcga |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31168685 |
aagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcacagggctcctatcactgtgagccactggtgccatcacctctgtgcagcga |
31168586 |
T |
|
| Q |
330 |
ttttcgtcatttgatacaagtcccattgctttcatctcttctactagtgtattgaaaacccttgccaccttcaaattctttgttaccc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31168585 |
ttttcgtcatttgatacaagtcccattgctttcatctcttctactagtgtattgaaaacccttgccaccttcaaattctttgttaccc |
31168498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 33303216 - 33303304
Alignment:
| Q |
208 |
cttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactg |
296 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| |||||| |
|
|
| T |
33303216 |
cttactctttaagaatgtctttaagaacactgctctttccagctcccatgccaccacccatgaacagtagcactggactcctttcactg |
33303304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 33251368 - 33251455
Alignment:
| Q |
209 |
ttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactg |
296 |
Q |
| |
|
||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| || || ||||| |||| |||||| |
|
|
| T |
33251368 |
ttactctttaagaatgtctttaagaacagtgctctttccagctcccatgccaccacccatgaacagtagaactggattcctctcactg |
33251455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 33271540 - 33271627
Alignment:
| Q |
209 |
ttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactg |
296 |
Q |
| |
|
||||||||| ||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| || || ||||| |||| |||||| |
|
|
| T |
33271540 |
ttactctttaagaatgtctttaagaacagtgctctttccagctcccatgccaccacccatgaacagtagaactggattcctctcactg |
33271627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 202 - 409
Target Start/End: Original strand, 38628500 - 38628707
Alignment:
| Q |
202 |
taatttcttactctttgagaatatctttaagcaccgtgctcttgccagctcccataccaccgcccatgaaaaggagcactgggctcctatcactgtgagc |
301 |
Q |
| |
|
||||| ||||||||||||||||||| || || || ||||||||||||||||||||||| || ||||| | ||| || ||||||||||||||||||||||| |
|
|
| T |
38628500 |
taattgcttactctttgagaatatccttgagtacagtgctcttgccagctcccatacctcctcccatcagaagtaggactgggctcctatcactgtgagc |
38628599 |
T |
|
| Q |
302 |
cactggtgccatcacctctgtgcagcgattttcgtcatttgatacaagtcccattgctttcatctcttctactagtgtattgaaaacccttgccaccttc |
401 |
Q |
| |
|
|| || ||||| |||||||| || || || |||||| | ||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
38628600 |
tacgggagccattacctctgtacattgagagtcatcatttactgcaattcccattgctttcatctcttctactaatgtattaaaaacacttgccaccttc |
38628699 |
T |
|
| Q |
402 |
aaattctt |
409 |
Q |
| |
|
| |||||| |
|
|
| T |
38628700 |
agattctt |
38628707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 38627751 - 38627876
Alignment:
| Q |
30 |
taagggccctatagataacatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttgaattcca |
129 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||| ||||| || || ||||| | | ||||||| |||| ||||| |||||| |||| || |
|
|
| T |
38627751 |
taagtgccctatagatgacatctgattctttgaaggcatctgcttcaatgactactgcatttcctgatgctcctgcccagaaaggtctgtttaaatttca |
38627850 |
T |
|
| Q |
130 |
ttcataaaggaaacaacgttaagttct |
156 |
Q |
| |
|
|||||||| |||||||| ||| ||||| |
|
|
| T |
38627851 |
ttcataaa-gaaacaacattaggttct |
38627876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1262 times since January 2019
Visitors: 2391