View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_5 (Length: 613)
Name: NF0214_low_5
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 226 - 462
Target Start/End: Complemental strand, 28814389 - 28814160
Alignment:
| Q |
226 |
gctaggtgtcagcttgtaaaacagttcctgatcctactcagcaggctaccaaccctcttaaggacacagaatcatatgtgcctacattctcgttttctcc |
325 |
Q |
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| T |
28814389 |
gctaggtgtcagcttgtaaaacagttcctgatcctactcagcaggctaccaaccctcttaaggacacaggatcatatgtgcctacattctcgttctctcc |
28814290 |
T |
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| Q |
326 |
taattacttttcttacaaatcatatgattcacttccactaatgtcttttgtgtgcttaacaaaacaaacactcacttttgcatataataaaataaatata |
425 |
Q |
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| T |
28814289 |
taattacttttcttaca-------tgattcacttccactaatgtcttttgtgtgcttaacaaaacaaacactcacttttgcatataataaaataaatata |
28814197 |
T |
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| Q |
426 |
ccattttcatcatccacatgcaaatttatcacttttt |
462 |
Q |
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| T |
28814196 |
ccattttcatcatccacatgcaaatttaccacttttt |
28814160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 28814527 - 28814451
Alignment:
| Q |
104 |
tcttggaaaatgtttcagatggtaaaaatgaaatcacttttgttttgttttggttgatatatacttttctcttcttg |
180 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28814527 |
tcttgaaaaatgtttgagatggtaaaaatgaaatcacttttgttttgttttggttgatatatacttttctcttcttg |
28814451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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