View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_51 (Length: 411)
Name: NF0214_low_51
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 30 - 402
Target Start/End: Complemental strand, 47908492 - 47908120
Alignment:
| Q |
30 |
attactctgtgcgagttttcaagtgattattgtcacttcgtctatctgaaggaataaaacacaatgctactactctattgttccaatgtatccttctttt |
129 |
Q |
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| T |
47908492 |
attactctgtgcgagttttcaagtgattattgtcacttcgtctgtctgaaggaataaaacacaatactactactctattgttccaatgtatccttctttt |
47908393 |
T |
|
| Q |
130 |
acactaatagataaaataaaacgttaaaagctgannnnnnnnnnnnnnnnnnnnnngacaggacacattaaaatcaagcccaccagaaaataaagtcatg |
229 |
Q |
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| T |
47908392 |
acactaatagataaaataaaacgttaaaagctgaattattattattattattttatgacaggacacaataaaatcaagcccaccagaaaataaagtcatg |
47908293 |
T |
|
| Q |
230 |
aaaaaatcagccttcactgggatattaatcaccacattcttttatgcattatgtggtcttctaggttatgaagcatttgggaacaaggcaccaggaaact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47908292 |
aaaaaatcagccttcactgggatattaatcaccacattcttttatgcattatgtggtcttctaggttatgaagcatttgggaacaaggcaccaggaaact |
47908193 |
T |
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| Q |
330 |
tcttaaccggatttggtttttatgaaccattctggctcgttgatattggtaatcttttcatcattattcatct |
402 |
Q |
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| T |
47908192 |
tcttaaccggatttggtttttatgaaccattctggctcgttgatattggtaatcttttcatcattattcatct |
47908120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 187 - 399
Target Start/End: Complemental strand, 47902084 - 47901872
Alignment:
| Q |
187 |
acaggacacattaaaatcaagcccaccagaaaataaagtcatgaaaaaatcagccttcactgggatattaatcaccacattcttttatgcattatgtggt |
286 |
Q |
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| T |
47902084 |
acaggatacattaaaatcaagcccaccggaaaatcaagtcatgaagaaatcaaatttgactggaattacaatcaccacattcttttatgcattatgtggt |
47901985 |
T |
|
| Q |
287 |
cttctaggttatgaagcatttgggaacaaggcaccaggaaacttcttaaccggatttggtttttatgaaccattctggctcgttgatattggtaatcttt |
386 |
Q |
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||| |||| |||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47901984 |
cttgtaggatatgcagcatttggaaacaaagcaccaggaaactttttaactggatttggtttttatgaaccattctggcttgttgatattggtaatcttt |
47901885 |
T |
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| Q |
387 |
tcatcattattca |
399 |
Q |
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| T |
47901884 |
tcatcgttattca |
47901872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 187 - 402
Target Start/End: Complemental strand, 47916780 - 47916565
Alignment:
| Q |
187 |
acaggacacattaaaatcaagcccaccagaaaataaagtcatgaaaaaatcagccttcactgggatattaatcaccacattcttttatgcattatgtggt |
286 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| ||||| |||||| || ||| || |||||||||||||||||||||||||||||||| |
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| T |
47916780 |
acaggacacattaaaatcaagcccgccagaaaatcaagttatgaagaaatcaagtttggttggaattataatcaccacattcttttatgcattatgtggt |
47916681 |
T |
|
| Q |
287 |
cttctaggttatgaagcatttgggaacaaggcaccaggaaacttcttaaccggatttggtttttatgaaccattctggctcgttgatattggtaatcttt |
386 |
Q |
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||| |||| |||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||| ||||| ||||||||||||| |
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| T |
47916680 |
cttttaggctatgcagcatttggaaacaaggcaccaggaaactttttaactggatttggtttttacgaaccatattggcttgttgacattggtaatcttt |
47916581 |
T |
|
| Q |
387 |
tcatcattattcatct |
402 |
Q |
| |
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| ||||| |||||||| |
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| T |
47916580 |
ttatcatcattcatct |
47916565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 187 - 402
Target Start/End: Complemental strand, 47923206 - 47922991
Alignment:
| Q |
187 |
acaggacacattaaaatcaagcccaccagaaaataaagtcatgaaaaaatcagccttcactgggatattaatcaccacattcttttatgcattatgtggt |
286 |
Q |
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|||||| ||||||||||| || |||||||||||| |||||||||| |||||| | | | ||| || ||| | |||| |||||||| ||||||||||| |
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| T |
47923206 |
acaggatacattaaaatctagtccaccagaaaatcaagtcatgaagaaatcatctcttattggaatcacaataagcacaatcttttattcattatgtggt |
47923107 |
T |
|
| Q |
287 |
cttctaggttatgaagcatttgggaacaaggcaccaggaaacttcttaaccggatttggtttttatgaaccattctggctcgttgatattggtaatcttt |
386 |
Q |
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||| |||| |||| ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
47923106 |
cttttaggctatggagccttcgggaacaaggcaccgggaaacttcttaactggatttggtttttatgaaccatattggcttgttgatattggtaatcttt |
47923007 |
T |
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| Q |
387 |
tcatcattattcatct |
402 |
Q |
| |
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|||||||||||||||| |
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| T |
47923006 |
tcatcattattcatct |
47922991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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