View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_52 (Length: 409)
Name: NF0214_low_52
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 28 - 350
Target Start/End: Original strand, 29507042 - 29507356
Alignment:
| Q |
28 |
aattgttatgtaaaatgactaaacatgagttgcttttcgggtaaaattagttgttatttacacgtaagatgcactcctcatcattctgtactaaaattga |
127 |
Q |
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| T |
29507042 |
aattgttatgtaaaatgactaaacatgagttgtttatcggttaaaatgagttgttattgacacgtaggctgaactcatcatcattttggcctaaaattgt |
29507141 |
T |
|
| Q |
128 |
atacgactaatatgactaacaaaagtaaagttaatggattaaaacagaacaacaaatagttataaattaaagttaaatcacataacaagtcaatggatca |
227 |
Q |
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||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
29507142 |
ataagactaatatgagtaacaaaagtaaagttaagggattagaacagaacaacaaatagttataaatgaaagttaaaccacataacaagtcaatggatca |
29507241 |
T |
|
| Q |
228 |
aatatgaaatttagcctaacttttatacatgacatagtggagaaaaatattagacgcataatttatatttgtgtatacttacgattcttattatacaacc |
327 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29507242 |
aatatgaaatttagcctaactttt---------atagtggagaaaaatattagacgcataatttatatttgtgtatacttacgattcttataatacaact |
29507332 |
T |
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| Q |
328 |
ct-aaagaaatcttataatacaaa |
350 |
Q |
| |
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|| ||||||||||||| ||||||| |
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| T |
29507333 |
ctaaaagaaatcttatgatacaaa |
29507356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 26777771 - 26777818
Alignment:
| Q |
132 |
gactaatatgactaacaaaagtaaagttaatggattaaaacagaacaa |
179 |
Q |
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| T |
26777771 |
gactaatatgactaacaaaagtaaagttaagggaacaaaacggaacaa |
26777818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 24948379 - 24948430
Alignment:
| Q |
139 |
atgactaacaaaagtaaagttaatggattaaaacagaacaacaaatagttat |
190 |
Q |
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||||||||||||||||||| || |||||||||||||||| |||||||||| |
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| T |
24948379 |
atgactaacaaaagtaaagcaaaaagattaaaacagaacaaaaaatagttat |
24948430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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