View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_54 (Length: 403)

Name: NF0214_low_54
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_54
NF0214_low_54
[»] chr3 (21 HSPs)
chr3 (1-399)||(34462836-34463231)
chr3 (73-399)||(34477878-34478202)
chr3 (77-255)||(34474102-34474280)
chr3 (73-334)||(27632677-27632942)
chr3 (73-334)||(34517469-34517734)
chr3 (73-162)||(34512128-34512217)
chr3 (73-250)||(27626279-27626445)
chr3 (74-162)||(27617257-27617345)
chr3 (74-162)||(34506042-34506130)
chr3 (82-162)||(34526769-34526849)
chr3 (1-75)||(34478236-34478310)
chr3 (1-56)||(27632996-27633051)
chr3 (224-337)||(34505882-34505999)
chr3 (1-56)||(34517778-34517833)
chr3 (224-337)||(27617097-27617214)
chr3 (1-75)||(34372195-34372271)
chr3 (232-347)||(34489152-34489268)
chr3 (1-56)||(27617400-27617455)
chr3 (1-56)||(34506185-34506240)
chr3 (73-146)||(34372328-34372399)
chr3 (1-51)||(34487168-34487218)
[»] scaffold1215 (1 HSPs)
scaffold1215 (73-246)||(838-1009)
[»] chr2 (2 HSPs)
chr2 (73-246)||(10526838-10527009)
chr2 (73-246)||(10533653-10533824)
[»] chr7 (1 HSPs)
chr7 (73-246)||(15741162-15741332)
[»] chr6 (1 HSPs)
chr6 (73-246)||(1575044-1575214)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 34463231 - 34462836
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaataaaatgaaataagacattgaaatttgatatctgaatgactgct 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34463231 ctgatcttaataaaaagatgagcatgaagcaaccattttaataaaaaactaaggaataaaatgaaataagacattgaaatttgatatctgaatgactgct 34463132  T
Q  101 tcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcagagttcaagcttcccagccgtgccaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34463131 tcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcagagttcaagcttcccagccgtgccaaagg 34463032  T
Q  201 tatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttcgcatagtatttaattcttatctaaatcagttcattatggtgatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34463031 tatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttcgcatagtatttaattcttatctaaatcaattcattatggtgatat 34462932  T
Q  301 tacaatgtatgctttctacatagggcatttggaagccgtgggaaaactccaatgttgattgggaattgcagcatgacaagagagataccatcactaatg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  34462931 tacaatgtatgctttctacatagggcatttggaagccgtgggaaaactccaatgttgattgggaatt---gcatgacaagagagataccatcactaatg 34462836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 73 - 399
Target Start/End: Complemental strand, 34478202 - 34477878
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||  ||||||  ||||||||||| |||| ||| |   |||||    
T  34478202 attgaaatttgatatctgagtgactgcatcactgttcctatatcagatttgtcctttgtgtgatgaaagcttaggggaggatgcaaccaggatggtgcag 34478103  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcatagtatttaattc 271  Q
    |  ||| |||| ||| ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |  |||||||| ||||    
T  34478102 aactcacgcttaccatcctcgccaaaggtatctgttgcttatcttgtgatttatgtgctttaattgtaacatagctcagtttcagtgtagtatttgattc 34478003  T
Q  272 ttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcatttggaagccgtgggaaaactccaatgttgattgggaattgcag 371  Q
    |||||||||||| |||||||||||| ||| | ||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||| |||   |    
T  34478002 ttatctaaatcaattcattatggtggtataaaaatgtatgcttcctacatagggaatttggaagcagcgggaaaactccaatgttgattgggcatt---g 34477906  T
Q  372 catgacaagagagataccatcactaatg 399  Q
    ||||||||||||||||||||||||||||    
T  34477905 catgacaagagagataccatcactaatg 34477878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 34474280 - 34474102
Alignment:
Q  77 aaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcagagtt 176  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||||||| |||||| |   |||||||||    
T  34474280 aaatttgatatctgaatgactgcttcactgctcctatatcagatttatcctgtgtgccatgaaaatttcggggaggaggaaatcaggatggtgcagagtt 34474181  T
Q  177 caagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc 255  Q
    ||||||||||| || ||| |||| |||||  |||||||||||||||  || || ||||| |||||||||||||| ||||    
T  34474180 caagcttcccaaccttgcgaaagctatctactgcttatcttgtgattcatatgatttaaatgtaacatagctcactttc 34474102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 334
Target Start/End: Complemental strand, 27632942 - 27632677
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||| ||| ||||||| ||||||||||||||||| |||||||||||||| ||| |||| || ||   ||||||||||| |||||||| |   |||||    
T  27632942 attgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtgctgcgtgcaataaaggcttaggggaggatgcaatcaggatggtgcag 27632843  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcat---agtatttaa 268  Q
    |  |||| ||||| |  |   | ||||||||||||  ||||||||||||| |||||||||||||||||| || ||| | |||| ||||   ||||||| |    
T  27632842 aactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttga 27632743  T
Q  269 ttcttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcatttggaa 334  Q
    ||||||| |||  || ||||||||| |||||| || ||||||||||||||||||||| ||||||||    
T  27632742 ttcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaa 27632677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 334
Target Start/End: Complemental strand, 34517734 - 34517469
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||| || |||| || ||   ||||||||||| |||||||| |   |||||    
T  34517734 attgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcttgcgtgcaataaaggcttaggggaggatgcaatcaggatggtgcag 34517635  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcat---agtatttaa 268  Q
    |  |||| ||||| |  |   | ||||||||||||  ||||||||||||| |||||||||||||||||| || ||| | |||| ||||   ||||||| |    
T  34517634 aactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttga 34517535  T
Q  269 ttcttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcatttggaa 334  Q
    ||||||| |||  || ||||||||| |||||| || ||||||||||||||||||||| ||||||||    
T  34517534 ttcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaa 34517469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 34512217 - 34512128
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    ||||||||||||||| ||||||||||||||| ||| | |||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  34512217 attgaaatttgatatttgaatgactgcttcaatgtccctatatcagatatgtcctgtgagccatgaaaatttgggggaggaggcaatcag 34512128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 27626445 - 27626279
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||| |||||||||||| || ||| | |||||||||| ||||||||| ||||||||||| | |||||||||||||||||      | ||    
T  27626445 attgaaatttgatatttgaatgactgctacaatgtccctatatcagatatgtcctgtgagccatgaaaatatgggggaggaggcaatcagggtgccgtag 27626346  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctca 250  Q
    ||||||||||         ||| |||||||| |||||||||||||||||| |||||  ||||||||||| ||||||||    
T  27626345 agttcaagct---------tgcaaaaggtatatgttgcttatcttgtgatttatgt--tttaattgtaaaatagctca 27626279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 27617345 - 27617257
Alignment:
Q  74 ttgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||  ||||||  ||||||||||| ||||||||    
T  27617345 ttgaaatttgatatcgaaatgaatgcttcactgttcctatatcagatttgtcctgtgtgtgatgaaagcttaggggaggatgcaatcag 27617257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 34506130 - 34506042
Alignment:
Q  74 ttgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||  ||||||  ||||||||||| ||||||||    
T  34506130 ttgaaatttgatatcgaaatgaatgcttcactgttcctatatcagatttgtcctgtgtgtgatgaaagcttaggggaggatgcaatcag 34506042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 34526849 - 34526769
Alignment:
Q  82 tgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcag 162  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||  ||||||  ||||||||||| ||||||||    
T  34526849 tgatatctgaatgactgctacactgttcctatatcagaattgtcctgtgtgtgatgaaagcttaggggaggatgcaatcag 34526769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34478310 - 34478236
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaataaaatgaaataagacatt 75  Q
    ||||||||||  ||||||||||||| |||||||||||||| |||||||| ||| || ||||||||||||||||||    
T  34478310 ctgatcttaacaaaaagatgagcatgaagcaaccattttagtcaaaaaccaagtaaaaaaatgaaataagacatt 34478236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27633051 - 27632996
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  27633051 ctgatcttaataaaaagatgagcatgaagcaaccattttagtcaaaaactaaggaa 27632996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 34505999 - 34505882
Alignment:
Q  224 tatgtgctttaattgtaacatagctcattttc-gcatag---tatttaattcttatctaaatcagttcattatggtgatattacaatgtatgctttctac 319  Q
    |||||||||||||||||| |||||||| |||| || |||   ||||| ||||||||||||  || || |||||| |||||| || |||||||||||||||    
T  34505999 tatgtgctttaattgtaaaatagctcagtttctgcgtagaagtatttgattcttatctaacccaatttattatgctgatataacgatgtatgctttctac 34505900  T
Q  320 atagggcatttggaagcc 337  Q
    |||| | |||||||||||    
T  34505899 atagtggatttggaagcc 34505882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34517833 - 34517778
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  34517833 ctgatcttaataaaaagatgagcatgaagcaaccattttagtcaaaaactaaggaa 34517778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 27617214 - 27617097
Alignment:
Q  224 tatgtgctttaattgtaacatagctcattttc-gcatag---tatttaattcttatctaaatcagttcattatggtgatattacaatgtatgctttctac 319  Q
    ||||||||||||| |||| |||||||| |||| || |||   ||||| ||||||||||||  || || |||||| |||||| || |||||||||||||||    
T  27617214 tatgtgctttaatagtaaaatagctcagtttctgcgtagaagtatttgattcttatctaacccaatttattatgctgatataacgatgtatgctttctac 27617115  T
Q  320 atagggcatttggaagcc 337  Q
    |||| | |||||||||||    
T  27617114 atagtggatttggaagcc 27617097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34372195 - 34372271
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaagg--aataaaatgaaataagacatt 75  Q
    ||||||||||| |||||| |||||| | ||||||||| || ||||||||||| |  || ||||||||||||||||||    
T  34372195 ctgatcttaataaaaagacgagcatgaggcaaccattatagtcaaaaactaaagaaaaaaaaatgaaataagacatt 34372271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 347
Target Start/End: Complemental strand, 34489268 - 34489152
Alignment:
Q  232 ttaattgtaacatagctcattttc-gcatagtatttaattcttatctaaatcagttcattatggtgatattacaatgtatgctttctacatagggcattt 330  Q
    ||||||||||||||| ||| |||| ||||||||||| ||||| |||||| ||| |||| |||| |||||| |  ||| ||  ||||||||||| | ||||    
T  34489268 ttaattgtaacatagatcaatttcagcatagtatttgattctcatctaactcaattcaatatgttgatataatgatgcataatttctacatagcggattt 34489169  T
Q  331 ggaagccgtgggaaaac 347  Q
    |||| ||| || |||||    
T  34489168 ggaacccgcggaaaaac 34489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27617455 - 27617400
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    |||||||| || ||||||||||||| ||| |||||| ||| |||||||||||||||    
T  27617455 ctgatcttgataaaaagatgagcatgaagtaaccatcttagtcaaaaactaaggaa 27617400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34506240 - 34506185
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaactaaggaa 56  Q
    |||||||| || ||||||||||||| ||| |||||| ||| |||||||||||||||    
T  34506240 ctgatcttgataaaaagatgagcatgaagtaaccatcttagtcaaaaactaaggaa 34506185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 34372328 - 34372399
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttag 146  Q
    |||||||||||||||||||||| ||| |||||| |||   ||||||||||||||  ||||  ||||||||||||    
T  34372328 attgaaatttgatatctgaatggctgtttcactcttc--ctatcagatttgtccaatgtgtgatgaaaatttag 34372399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34487218 - 34487168
Alignment:
Q  1 ctgatcttaatcaaaagatgagcattaagcaaccattttaatcaaaaacta 51  Q
    ||||||||||| ||||||||||||| || |||||| |||| ||||||||||    
T  34487218 ctgatcttaataaaaagatgagcatgaaacaaccaatttattcaaaaacta 34487168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 1009 - 838
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    |||||||||||||||||||||| ||| || ||||||| |||  |||||||||||||||||  || |||||||| ||||||| | |||||| |   |||||    
T  1009 attgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaatttaagggaggatgtaatcaggatggtgcag 912  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    ||||||||  ||||| |   |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  911 agttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacatag 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 10527009 - 10526838
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    |||||||||||||||||||||| ||| || ||||||| |||  |||||||||||||||||  || |||||||| ||||||| | |||||| |   |||||    
T  10527009 attgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaatttaagggaggatgtaatcaggatggtgcag 10526912  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    ||||||||  ||||| |   |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  10526911 agttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacatag 10526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 10533824 - 10533653
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    |||||||||||||||||||||| ||| || ||||||| |||  |||||||||||||||||  || |||| ||||||||||| | |||||| |   |||||    
T  10533824 attgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaacttaggggaggatgtaatcaggatggtgcag 10533727  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    ||||||||  ||||| |   |||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  10533726 agttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacatag 10533653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 15741162 - 15741332
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||||||| || | | |||||||||| |||  |||||||||||||||||  || |||||||||||||||| | |||||| |   |||||    
T  15741162 attgaaatttgatatctgactggccg-ttcactgttcctat--cagatttgtcctgtgtgtgataaaaatttaggggaggatgtaatcaggatggtgcag 15741258  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    |||||||||||||||  |  ||||||||||| |||| | | ||||||||| ||||||||| |||||||||||||    
T  15741259 agttcaagcttcccaatctcgccaaaggtatttgttacctgtcttgtgatttatgtgcttaaattgtaacatag 15741332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 1575214 - 1575044
Alignment:
Q  73 attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag 172  Q
    ||||||||||||||||||| || | | |||||||||| |||  |||||||||||||||||  || |||||||||||||||| | |||||| |   |||||    
T  1575214 attgaaatttgatatctgactggccg-ttcactgttcctat--cagatttgtcctgtgtgtgataaaaatttaggggaggatgtaatcaggatggtgcag 1575118  T
Q  173 agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatag 246  Q
    |||||||||||||||  |  ||||||||||| |||| | | ||||||||| ||||||||| |||||||||||||    
T  1575117 agttcaagcttcccaatctcgccaaaggtatttgttacctgtcttgtgatttatgtgcttaaattgtaacatag 1575044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1469 times since January 2019
Visitors: 2391