View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_low_55 (Length: 403)
Name: NF0214_low_55
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_low_55
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 38122596 - 38122235
Alignment:
Q
30
gttctgaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagta
129
Q
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
T
38122596
gttctaaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagca
38122497
T
Q
130
gacagcccctgcaatagatattaccaagatattattactgttattattctatattacat-aaaaaatgcatttagttatgcaagcacgcactgtttggca
228
Q
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
T
38122496
gacagcccctgcaatagataataccaagatattattactgttgttattctatattacatgaaaaaatgcatttagttatgcaagcacgcactgtttggca
38122397
T
Q
229
gcatgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaattt
328
Q
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
38122396
gaatgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaattt
38122297
T
Q
329
ccttagcaaagttgatttcaactttataagtcttcgaacggtgtgattttcttatcctcttc
390
Q
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
T
38122296
ccttagcaaagttgatttcaactttataagtcttcgaacggtatgattttcttatcctcttc
38122235
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 378
Target Start/End: Complemental strand, 38114104 - 38113753
Alignment:
Q
33
ctgaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagtagac
132
Q
|||||||| |||||||||||| |||| | ||| ||||||||||| ||||| | ||||| || || || ||||| || || |||||||| ||||| ||||
T
38114104
ctgaagctagaatgcagccctctgcatccaagaacaccacctcctacatctgtgaaatttttcggatcattgtggaaaaagttttggcggacaagcagac
38114005
T
Q
133
agcccctgcaatagat-attaccaagatattattactgttattattctatattacat--aaaaaatgcatttagtt--atgcaa-gcacgcactgtttgg
226
Q
||||||| || ||||| ||||| ||||||||| | | || ||||| ||||||| || ||||||| |||||| ||| || || || |||||||||
T
38114004
agcccctacagtagattattacaaagatattagtgcccttgttattttatattaaattaaaaaaatacatttataacaatggaaagcgcgtactgtttgg
38113905
T
Q
227
cagcatgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaat
326
Q
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||
T
38113904
cagcatgttgcctcaagataatgtcaagaaccctaatcgcttcttgataattctcagtttcatgcccttttaaggcattggcgatggcctgcagagggat
38113805
T
Q
327
ttccttagcaaagttgatttcaactttataagtcttcgaacggtgtgatttt
378
Q
| |||||| ||||||||||||| || ||||| || ||||||||||||
T
38113804
ctttgaggcaaagctgatttcaactttgtaggtctttgatcggtgtgatttt
38113753
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 14915000 - 14914674
Alignment:
Q
30
gttctgaagctggaatgcagccctttgcaactaagtacaccacctccaacatcattcaaattatttgggtcgttgtgaaagaaattttggcgcacaagta
129
Q
||||| ||||| ||||||| |||| |||| | |||||| ||||| || |||| || ||| | | || ||||| || |||||| ||||||||||||| |
T
14915000
gttctaaagctcgaatgcaaccctctgcatccaagtactccaccacctacattcttgaaactcctgggatcgttatggaagaaactttggcgcacaagca
14914901
T
Q
130
gacagcccctgcaatagatattaccaagatattattactgttattattctatattacataaaaaatgcatttagttatgcaagcacgcactgtttggcag
229
Q
||| || |||| || ||||||| |||||||||||| |||| || ||| |||||| | |||| | ||| || | ||| || |||||||||||||||||
T
14914900
aacatcctctgcgatggatattaaaaagatattattaatgttgttgttcgatattaagttaaaattacatatattaatgaaaacacgcactgtttggcag
14914801
T
Q
230
catgttgtctcaagataatatcaagaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaatttc
329
Q
||||||||||||||||| ||||||||||||| | |||||||||||||||||| | ||| || ||||| ||||| || |||||||||||||||||||||
T
14914800
catgttgtctcaagatagtatcaagaacccttagggcttcttgataattctcggtttcttgacccttaaaggctctgtcaatggcctgcagaggaatttt
14914701
T
Q
330
cttagcaaagttgatttcaactttata
356
Q
||| |||||||||||||||||||
T
14914700
tgatgcatagttgatttcaactttata
14914674
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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