View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_57 (Length: 399)
Name: NF0214_low_57
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 26 - 370
Target Start/End: Complemental strand, 14708195 - 14707870
Alignment:
| Q |
26 |
tgaatagtcttatcaatttgcaataaggttggttagtgtagcacgtaggcatatatcgcaccatgcttgtgtggccatagctcgatccatgcgctctttt |
125 |
Q |
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| T |
14708195 |
tgaataatcttatctatttgcaataaggttggttagtgtagcacgtaggtatatatcgcaccatgcttgtgtggccatagctcgatccatacgctctttt |
14708096 |
T |
|
| Q |
126 |
gttcctccattactatctcaccctcttccccatgtatattggtagtctttcaacggtaaatcaacaaggttgcagtcttgaacaacttttctaaagtcgt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14708095 |
gttcctccattactatctcaccctcttccccatgtatattggtagcctttcaacggtaaatcaacaaggttgcagtcttgaacaacttttctaaagtcgt |
14707996 |
T |
|
| Q |
226 |
gaattctccaaggtgatcagtatgatttcgtttatctctattcgattcatgtcattaaaatcccctttatgtatcatgtgagactaatgttttgcgctag |
325 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14707995 |
-------------------gtatgatttcgtttatctctattcgattgatgtaattaaaatcccctttatgtaccatgtgagactaatgttttgcgctag |
14707915 |
T |
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| Q |
326 |
agtttccaataaatctcaagaatccttcctactctctattcatag |
370 |
Q |
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||||| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
14707914 |
agtttgcaataaattccaagaatccttgctactctctattcatag |
14707870 |
T |
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