View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_58 (Length: 399)
Name: NF0214_low_58
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 41964842 - 41965179
Alignment:
| Q |
13 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
112 |
Q |
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| T |
41964842 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
41964941 |
T |
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| Q |
113 |
cacttgcttagtgtggttagacttaagattgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaattttattggaatgtgacagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41964942 |
cacttgcttagtgtggttagacttaagattgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaattttattagaatgtgacagt |
41965041 |
T |
|
| Q |
213 |
cctaaaagtgtttcacacatgatgattttattactcttcaaaaccaaaaggaatgtatagagtatctgagtaagtcatttttgcaaagaacaagaggatg |
312 |
Q |
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| T |
41965042 |
cctaaaagtgtttcacgcatgat---tttattactcttcaaaaccaaaaggaatgtatagagtatctgagtaagtcatttttgcaaagaacaagaggatg |
41965138 |
T |
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| Q |
313 |
aaatcttgatctaattgaactctattgaattgttcagatcaaaataataaggttacct |
370 |
Q |
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| T |
41965139 |
aa-----------------ctctattgaattgttcagatcaaaataataaggttacct |
41965179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 177 - 370
Target Start/End: Original strand, 1226424 - 1226614
Alignment:
| Q |
177 |
ttgaccttgtatacaattttattggaatgtgacagtcctaaaagtgtttcacacatgatgattttattactcttcaaaaccaaaaggaatgtatagagta |
276 |
Q |
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| T |
1226424 |
ttgaccttgtatacaattttattggaatgtgacagtccgaaaagtgtttcacacatga---ttttattactcctcaaaaccaaaaggaatgtatagagta |
1226520 |
T |
|
| Q |
277 |
tctgagtaagtcatttttgcaaagaacaagaggatgaaatcttgatctaattgaactctattgaattgttcagatcaaaataataaggttacct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226521 |
tctgagtaagtcatttttgcaaagaacaagaggatgaaatcttgatctaattgaactctattgaattgttcagatcaaaataataaggttacct |
1226614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 1226296 - 1226428
Alignment:
| Q |
13 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226296 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
1226395 |
T |
|
| Q |
113 |
cacttgcttagtgtggttagacttaagattgac |
145 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1226396 |
cacttgcttagtgtggttagacttaagattgac |
1226428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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