View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_63 (Length: 387)

Name: NF0214_low_63
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_63
NF0214_low_63
[»] chr1 (1 HSPs)
chr1 (30-375)||(46214945-46215290)
[»] chr3 (1 HSPs)
chr3 (30-151)||(366720-366841)
[»] chr6 (1 HSPs)
chr6 (139-231)||(18202973-18203065)
[»] chr8 (1 HSPs)
chr8 (96-150)||(7523866-7523920)
[»] chr4 (3 HSPs)
chr4 (33-76)||(42742408-42742451)
chr4 (33-76)||(42751767-42751810)
chr4 (33-76)||(42761229-42761272)
[»] chr5 (7 HSPs)
chr5 (28-62)||(3207845-3207879)
chr5 (28-58)||(3215781-3215811)
chr5 (28-58)||(3219287-3219317)
chr5 (28-61)||(3179074-3179107)
chr5 (28-61)||(3220701-3220734)
chr5 (28-61)||(3230934-3230967)
chr5 (28-61)||(3239733-3239766)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 46215290 - 46214945
Alignment:
Q  30 gttgtcatgattgctgattttatagcagctggactccattcaggatgtttagctttgatcatagccgcgattccacttacatgaggacatgacatcgaag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215290 gttgtcatgattgctgattttatagcagctggactccattcaggatgtttagctttgatcatagccgcgattccacttacatgaggacatgacatcgaag 46215191  T
Q  130 ttccggaaagtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgc 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215190 ttccggagagtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgc 46215091  T
Q  230 tactatatcaggttttagaatttcaagtgtgagtaaacttggccctcttgatgaaaatgctgctactataggagatggtctaattcctaatcttgtgtta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215090 tactatatcaggttttagaatttcaagtgtgagtaaacttggccctcttgatgaaaatgctgctactataggagatggtctaattcctaatcttgtgtta 46214991  T
Q  330 tgaaaagctaatgtagctgtagcttttttagttgttaacacatatt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46214990 tgaaaagctaatgtagctgtagcttttttagttgttaacacatatt 46214945  T

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Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 366720 - 366841
Alignment:
Q  30 gttgtcatgattgctgattttatagcagctggactccattcaggatgtttagctttgatcatagccgcgattccacttacatgaggacatgacatcgaag 129  Q
    ||||||||||||   |||||||||| ||||||||||||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  366720 gttgtcatgattaaagattttatagtagctggactccattcggtatgtttagctttgatcattttcgcgattccacttacatgaggacatgacattgaag 366819  T
Q  130 ttccggaaagtatgttaaactt 151  Q
    |||||||||  |||||||||||    
T  366820 ttccggaaaacatgttaaactt 366841  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 18203065 - 18202973
Alignment:
Q  139 gtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgcta 231  Q
    ||||||||||||| |  ||| |||||| | || ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  18203065 gtatgttaaacttcattcttttatgatatgttagtaaacttgatggaccattaagtccactccaaactgcaagaatgttcacaccaggtgcta 18202973  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 7523866 - 7523920
Alignment:
Q  96 gcgattccacttacatgaggacatgacatcgaagttccggaaagtatgttaaact 150  Q
    ||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||    
T  7523866 gcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaact 7523920  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42742408 - 42742451
Alignment:
Q  33 gtcatgattgctgattttatagcagctggactccattcaggatg 76  Q
    |||||||||||||| || ||||||||||||||||| ||||||||    
T  42742408 gtcatgattgctgacttgatagcagctggactccaatcaggatg 42742451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42751767 - 42751810
Alignment:
Q  33 gtcatgattgctgattttatagcagctggactccattcaggatg 76  Q
    |||||||||||||| || ||||||||||||||||| ||||||||    
T  42751767 gtcatgattgctgacttgatagcagctggactccaatcaggatg 42751810  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42761229 - 42761272
Alignment:
Q  33 gtcatgattgctgattttatagcagctggactccattcaggatg 76  Q
    |||||||||||||| || ||||||||||||||||| ||||||||    
T  42761229 gtcatgattgctgacttgatagcagctggactccaatcaggatg 42761272  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 3207845 - 3207879
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagctgga 62  Q
    |||||||||||||||| ||||||||||||||||||    
T  3207845 cagttgtcatgattgcggattttatagcagctgga 3207879  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 58
Target Start/End: Original strand, 3215781 - 3215811
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagc 58  Q
    |||||||||||||||||||||||||||||||    
T  3215781 cagttgtcatgattgctgattttatagcagc 3215811  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 58
Target Start/End: Original strand, 3219287 - 3219317
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagc 58  Q
    |||||||||||||||||||||||||||||||    
T  3219287 cagttgtcatgattgctgattttatagcagc 3219317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 3179107 - 3179074
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagctgg 61  Q
    ||||||||||||||||||||||||| ||||||||    
T  3179107 cagttgtcatgattgctgattttattgcagctgg 3179074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 3220701 - 3220734
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagctgg 61  Q
    |||||||||||||||||||||||||||| |||||    
T  3220701 cagttgtcatgattgctgattttatagcggctgg 3220734  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 3230934 - 3230967
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagctgg 61  Q
    |||||||||||||||||||||||||||| |||||    
T  3230934 cagttgtcatgattgctgattttatagcggctgg 3230967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 3239733 - 3239766
Alignment:
Q  28 cagttgtcatgattgctgattttatagcagctgg 61  Q
    ||||||||||||||||||||||||| ||||||||    
T  3239733 cagttgtcatgattgctgattttattgcagctgg 3239766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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