View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_65 (Length: 386)
Name: NF0214_low_65
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 29 - 377
Target Start/End: Original strand, 32528002 - 32528349
Alignment:
| Q |
29 |
aaccataactaagaatcacggaagtgaaaaggtcttgatacataaaatgaccgataaccaatcgcatatccaaaatgagggatcgacaaatctgagcacc |
128 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32528002 |
aaccataactaagaatcacggaagcgaaaaggtcttgatacataaaatgaccgataaccaatcacatatccaaaatgagggatcgacaaatctgagcacc |
32528101 |
T |
|
| Q |
129 |
ataaatagtaaaacgacaacacatgaaagaacaccatcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttg |
228 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528102 |
ataaatagtaaaacgacgacacatgaaagaacaccatcaaatattaacagacacaaaaccaccattgtggttggcaataaaccaaacgccttgaaagttg |
32528201 |
T |
|
| Q |
229 |
tagatttggaaagaaccagaaatcagaggcaagaaatacaaccacaaactaaagatttcaaactgaacctacctagatggggnnnnnnnnnccaaaacca |
328 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32528202 |
tagatctggaaagaaccagaaatcagaggcaagaaatacagccacaaactaaagatttcaaactgaacctacctagatgggg-tttttcttccaaaacca |
32528300 |
T |
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| Q |
329 |
ctgacgtaaccgccagagttctgaaataacaatggacaaacattcatct |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528301 |
ctgacgtaaccgccagagttctgaaataacaatggacaaacattcatct |
32528349 |
T |
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