View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_66 (Length: 385)
Name: NF0214_low_66
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 98 - 372
Target Start/End: Original strand, 3030793 - 3031068
Alignment:
| Q |
98 |
ttggcccacaatgcaacttaatcacaatttaaaattttt-tgtatcaaaattcaaaaataaactcatgcttgattaactaaataaagaacgagatttatg |
196 |
Q |
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| T |
3030793 |
ttggcccacaatgcaactcaatcacaatttaaaaaatttgtgtatcaaaattcgaaactaaactcagccttgattaactaaataaagaacaagatttatg |
3030892 |
T |
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| Q |
197 |
gtcatggttcataccagagaaaagaacgggcgactgtggtatgatagtaagaactcttctcaagtctgctagcccgaacgtagaaatatcacatccatca |
296 |
Q |
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| T |
3030893 |
gtcatagttcataccagagaaaagaacgggggactgtggtatgatagtaagaactcttctcaagtctgctagtccgaacgtagaaatatcacatccatca |
3030992 |
T |
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| Q |
297 |
ataatgattcttccactttgtagttccacaatccgaaataacgcattaagcatgctagactttcctgcaccagttc |
372 |
Q |
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| T |
3030993 |
ataatgattcttccactttgtagttccacaatccgaaataacgcattaagcatgctagactttcctgcaccagttc |
3031068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 203 - 372
Target Start/End: Original strand, 3006817 - 3006986
Alignment:
| Q |
203 |
gttcataccagagaaaagaacgggcgactgtggtatgatagtaagaactcttctcaagtctgctagcccgaacgtagaaatatcacatccatcaataatg |
302 |
Q |
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| T |
3006817 |
gttcataccggagaaaagaacaggcgactgtggtatgatagtaagaactcttcgcaaatctactagtccgaatgtagaaatatcacatccatcaataatg |
3006916 |
T |
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| Q |
303 |
attcttccactttgtagttccacaatccgaaataacgcattaagcatgctagactttcctgcaccagttc |
372 |
Q |
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| T |
3006917 |
attcttccgctttgcaattccacaatccggaacagtgcattaagcatgctagactttcctgcaccagttc |
3006986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 3023514 - 3023576
Alignment:
| Q |
119 |
tcacaatttaaaattttttgtatcaaaattcaaaaataaactcatgcttgattaactaaataa |
181 |
Q |
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|||||| |||||||||| |||| |||||||||||| |||||||||| || ||||||||||||| |
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| T |
3023514 |
tcacaacttaaaattttgtgtaacaaaattcaaaattaaactcatgtttaattaactaaataa |
3023576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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