View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_68 (Length: 363)

Name: NF0214_low_68
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_68
NF0214_low_68
[»] chr6 (1 HSPs)
chr6 (30-353)||(10116186-10116509)
[»] chr2 (7 HSPs)
chr2 (30-96)||(41591816-41591882)
chr2 (90-159)||(41591667-41591735)
chr2 (232-353)||(1403820-1403941)
chr2 (232-294)||(410623-410685)
chr2 (232-353)||(1400099-1400220)
chr2 (233-353)||(965079-965205)
chr2 (207-353)||(821420-821570)
[»] chr3 (1 HSPs)
chr3 (167-353)||(45810056-45810242)
[»] chr7 (2 HSPs)
chr7 (232-334)||(12105613-12105715)
chr7 (235-334)||(1445672-1445771)
[»] chr1 (1 HSPs)
chr1 (235-290)||(48675098-48675153)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 10116186 - 10116509
Alignment:
Q  30 taactaccttggttaacttgtaaaccaagcaatctagtttgttatggagttagttacatatctcaatttctctaagaaaccctaattccataatctagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116186 taactaccttggttaacttgtaaaccaagcaatctagtttgttatggagttagttacatatctcaatttctctaagaaaccctaattccataatctagtt 10116285  T
Q  130 ttacacacaaacttgcactgtattctatcaaatggtggaagctaatgtaacaatagagagaacagagaaactaaggctacttacataatcatatatgttt 229  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116286 ttacacacaaacttgcactgtgttctatcaaaaggtggaagctaatgtagcaatagagagaacagagaaactaaggctacttacataatcatatatgttt 10116385  T
Q  230 ttaattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttcta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10116386 ttaattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttcta 10116485  T
Q  330 aaactctcgcattctcaagaataa 353  Q
    ||||||||||||||||||||||||    
T  10116486 aaactctcgcattctcaagaataa 10116509  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 41591882 - 41591816
Alignment:
Q  30 taactaccttggttaacttgtaaaccaagcaatctagtttgttatggagttagttacatatctcaat 96  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41591882 taactaccttggttaacttgtaagccaagcaatctagtttgttatggagttagttacatatctcaat 41591816  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 41591735 - 41591667
Alignment:
Q  90 tctcaatttctctaagaaaccctaattccataatctagttttacacacaaacttgcactgtattctatca 159  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  41591735 tctcaatttctctaagaa-ccctaattccataaactagttttacacacaaacttgcactttgttctatca 41591667  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 1403941 - 1403820
Alignment:
Q  232 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 331  Q
    ||||| ||||| |||||||| ||| ||| |||||||||||||||| |||||||||  |||||  | | ||  | | ||||||||||||||||||||||||    
T  1403941 aattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaa 1403842  T
Q  332 actctcgcattctcaagaataa 353  Q
    ||||| ||||| || |||||||    
T  1403841 actcttgcattatccagaataa 1403820  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 410685 - 410623
Alignment:
Q  232 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttaga 294  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| ||||||    
T  410685 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttaga 410623  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 1400220 - 1400099
Alignment:
Q  232 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 331  Q
    ||||||||||| |||||||  ||||||||||||||||||| |||| |||||||||  ||| |  | | ||  | | |||||||||| |||||||||||||    
T  1400220 aattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaa 1400121  T
Q  332 actctcgcattctcaagaataa 353  Q
    ||||| |||||||  |||||||    
T  1400120 actcttgcattctgcagaataa 1400099  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 965079 - 965205
Alignment:
Q  233 attgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattt------tagagcgtttcccgcaacaccagattgacatagttt 326  Q
    ||||| |||| ||||| ||||||||||||  ||||||| ||||| |||||||||| ||      |||| | ||||  | | ||||| |||||||||||||    
T  965079 attgagagttgacatgctgaagaagccctatgacatgatgataatactctttctaattctactttagaccctttcgtgtagcaccacattgacatagttt 965178  T
Q  327 ctaaaactctcgcattctcaagaataa 353  Q
    |||||||||| |||||||| |||||||    
T  965179 ctaaaactcttgcattctccagaataa 965205  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 353
Target Start/End: Complemental strand, 821570 - 821420
Alignment:
Q  207 tacttacataatcatatatgtttttaat----tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcc 302  Q
    ||||||||||||| |||||||| | |||    |||||||| |||||||| |||||||||||| ||||  |||||    |||||||||| |||  ||||      
T  821570 tacttacataatcgtatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttat 821471  T
Q  303 cgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataa 353  Q
     |   | |||||||| ||||||||||||||||||||||||||  |||||||    
T  821470 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataa 821420  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 353
Target Start/End: Original strand, 45810056 - 45810242
Alignment:
Q  167 gaagctaatgtaacaatagagagaacagagaaactaaggctacttacataatcatatatgtttttaat----tgaaagtttacatgttgaagaagccctt 262  Q
    |||||||||| |||||  ||||||| ||||||| ||   ||||||||||| ||||||||||| | |||    |||||||| |||| ||| ||||||||||    
T  45810056 gaagctaatgaaacaaaggagagaatagagaaaata---ctacttacata-tcatatatgttatcaataaattgaaagttgacattttgcagaagccctt 45810151  T
Q  263 ggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataa 353  Q
    |||||||| ||||| | | ||||||||||||| ||||| | ||  ||||| |||| |||||||||||||||| | |||||||  |||||||    
T  45810152 ggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatagtttctaaaacttttgcattcttcagaataa 45810242  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 12105715 - 12105613
Alignment:
Q  232 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 331  Q
    ||||||||||| |||||||| |||||| |||| ||| |||| |||   ||||||||||| |||  |||||||| | ||||||||||||||| ||||||||    
T  12105715 aattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttctaaa 12105616  T
Q  332 act 334  Q
    |||    
T  12105615 act 12105613  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 1445672 - 1445771
Alignment:
Q  235 tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaaact 334  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||   |||||||||| | ||| ||||| | | | ||||| |||||||||||||||||||||    
T  1445672 tgaaaatttacatgttgcagaagcccttgaacatgaggttagttctctttctatctcagatcgttttctgaagcaccaaattgacatagtttctaaaact 1445771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 48675098 - 48675153
Alignment:
Q  235 tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattt 290  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  | ||||||||||    
T  48675098 tgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctattt 48675153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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