View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_8 (Length: 577)

Name: NF0214_low_8
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_8
NF0214_low_8
[»] chr5 (21 HSPs)
chr5 (340-477)||(8550773-8550910)
chr5 (7-144)||(9074857-9074994)
chr5 (59-144)||(8677637-8677722)
chr5 (56-144)||(8548277-8548365)
chr5 (59-142)||(8636701-8636784)
chr5 (7-145)||(8528777-8528915)
chr5 (67-144)||(1600477-1600554)
chr5 (7-144)||(8535333-8535470)
chr5 (59-144)||(8644044-8644129)
chr5 (56-108)||(8641242-8641294)
chr5 (220-260)||(8550691-8550731)
chr5 (8-95)||(9003351-9003438)
chr5 (68-114)||(2845222-2845268)
chr5 (68-114)||(2857043-2857089)
chr5 (67-114)||(2905141-2905188)
chr5 (423-474)||(8534713-8534764)
chr5 (423-473)||(1601066-1601116)
chr5 (68-114)||(2874653-2874699)
chr5 (421-474)||(8548783-8548836)
chr5 (412-463)||(8640704-8640755)
chr5 (423-473)||(9002563-9002613)
[»] scaffold0627 (1 HSPs)
scaffold0627 (51-144)||(4492-4585)
[»] chr6 (1 HSPs)
chr6 (49-144)||(16716179-16716274)
[»] chr7 (5 HSPs)
chr7 (7-117)||(35779696-35779806)
chr7 (423-474)||(48362528-48362579)
chr7 (272-306)||(43402937-43402971)
chr7 (51-144)||(48362030-48362128)
chr7 (421-473)||(35777552-35777604)
[»] chr4 (1 HSPs)
chr4 (7-145)||(9442938-9443076)
[»] chr1 (1 HSPs)
chr1 (56-144)||(5130638-5130726)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 8550773 - 8550910
Alignment:
Q  340 ctaagtagttgatggatgttcggaactattccaaaccccgtgcaatttgaaaattttgcaacttttctttatcattgttgactaatattgttataattta 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8550773 ctaagtagttgatggatgttcggaactattccaaaccccgtgcaaattgaaaattttgcaacttttctttatcattgttgactaatattgttataattta 8550872  T
Q  440 tttaggtgtgcaaagtataaattgcaggaagaaaataa 477  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8550873 tttaggtgtgcaaagtataaattgcaggaagaaaataa 8550910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 9074857 - 9074994
Alignment:
Q  7 tatggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaag 106  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||| ||||||    
T  9074857 tatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaag 9074956  T
Q  107 gagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    ||||||||||  | ||||| ||||||||||||||||||    
T  9074957 gagacaatatcgaggtgctgaatatccactcaaggtaa 9074994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 8677722 - 8677637
Alignment:
Q  59 taattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||    
T  8677722 taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 8548277 - 8548365
Alignment:
Q  56 aagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||    
T  8548277 aagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 8636784 - 8636701
Alignment:
Q  59 taattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggt 142  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||    
T  8636784 taattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 8528915 - 8528777
Alignment:
Q  7 tatggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaag 106  Q
    ||||| ||||||||||||||||| ||||||| ||    ||| | |||| ||||||| || || |||||||||||||| ||||||||||||||  ||||||    
T  8528915 tatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaag 8528816  T
Q  107 gagacaatattcatgtgctaaatatccactcaaggtaaa 145  Q
    ||| ||||||| | || || |||||||||||||||||||    
T  8528815 gagtcaatattgaggttctgaatatccactcaaggtaaa 8528777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 1600477 - 1600554
Alignment:
Q  67 catattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||||| | ||||| ||||||||||||||||||    
T  1600477 catattccaagtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaa 1600554  T

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Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 8535470 - 8535333
Alignment:
Q  7 tatggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaag 106  Q
    ||||||||| |||||||||||||  | |||| |   ||||| |||||| ||||||| || || |||||||||||||| ||||||||||||||  ||||||    
T  8535470 tatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaag 8535371  T
Q  107 gagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    | ||||||||| | || || ||||||||||||||||||    
T  8535370 gtgacaatattgaggttctgaatatccactcaaggtaa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 8644129 - 8644044
Alignment:
Q  59 taattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| | |  |||| ||||||||||||||||||    
T  8644129 taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 8641294 - 8641242
Alignment:
Q  56 aagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaagga 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8641294 aagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 8550731 - 8550691
Alignment:
Q  220 cctatgtttggttcaacttctacttctcttaaaatcacggc 260  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8550731 cctatgtttggttcaacttctacttctcttaaaatcacggc 8550691  T

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Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 9003438 - 9003351
Alignment:
Q  8 atggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaagga 95  Q
    ||||||||| |||||||| | | || |||  ||||||||| ||  || |||||||||| |||||||||||||||||||||||||||||    
T  9003438 atggattcagagtttttcaagttcacggggctcaatcaaaattagttgaagtaattccacatattccaagtctaatctcattgaagga 9003351  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2845222 - 2845268
Alignment:
Q  68 atattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 114  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  2845222 atattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2845268  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2857043 - 2857089
Alignment:
Q  68 atattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 114  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  2857043 atattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2857089  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 2905141 - 2905188
Alignment:
Q  67 catattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 114  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  2905141 catattccaagtctaatatcattgaaagatgtcgtgaatggagacaat 2905188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 474
Target Start/End: Complemental strand, 8534764 - 8534713
Alignment:
Q  423 aatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaaa 474  Q
    ||||||||| |||||||| |||||||||||||| |||||||| |||||||||    
T  8534764 aatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaa 8534713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 473
Target Start/End: Original strand, 1601066 - 1601116
Alignment:
Q  423 aatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaa 473  Q
    ||||||||| |||||||| |||||||||||||| |||||||| ||||||||    
T  1601066 aatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa 1601116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2874653 - 2874699
Alignment:
Q  68 atattccaagtctaatctcattgaaggatgtcgtgaaaggagacaat 114  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  2874653 atattcaaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2874699  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 474
Target Start/End: Original strand, 8548783 - 8548836
Alignment:
Q  421 ctaatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaaa 474  Q
    ||||||||||| |||||||| |||||||| ||||| |||||| |||||||||||    
T  8548783 ctaatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaa 8548836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 8640755 - 8640704
Alignment:
Q  412 cattgttgactaatattgttataatttatttaggtgtgcaaagtataaattg 463  Q
    |||||||  ||||||||||| |||||||| |||||||||||||| |||||||    
T  8640755 cattgttccctaatattgttttaatttatataggtgtgcaaagtttaaattg 8640704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 473
Target Start/End: Complemental strand, 9002613 - 9002563
Alignment:
Q  423 aatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaa 473  Q
    ||||||||| |||||||| |||||||||||||| |||||||  ||||||||    
T  9002613 aatattgttgtaatttatataggtgtgcaaagtttaaattgagggaagaaa 9002563  T

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Target: scaffold0627 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 4585 - 4492
Alignment:
Q  51 ttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||||||||    
T  4585 ttttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 16716274 - 16716179
Alignment:
Q  49 ttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| | ||| | ||||||||||||||||||    
T  16716274 ttttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa 16716179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 35779806 - 35779696
Alignment:
Q  7 tatggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaag 106  Q
    ||||||| ||||||||||||||| | ||||| ||  ||||| | | || |||||||||| ||||||||||||||||| |||||||||||||| || ||||    
T  35779806 tatggatacaaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaag 35779707  T
Q  107 gagacaatatt 117  Q
    |||||||||||    
T  35779706 gagacaatatt 35779696  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 474
Target Start/End: Original strand, 48362528 - 48362579
Alignment:
Q  423 aatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaaa 474  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||||||||    
T  48362528 aatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaa 48362579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 43402971 - 43402937
Alignment:
Q  272 tgcactttgtagcttgtggaaatcacggctgaaac 306  Q
    ||||||||||||||||||||||||||||| |||||    
T  43402971 tgcactttgtagcttgtggaaatcacggccgaaac 43402937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 48362030 - 48362128
Alignment:
Q  51 ttttcaagtaattcctcatattccaagtctaatct-----cattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    |||| ||||||| || ||||||||||||||||| |     |||||||||||||| |||||||||| |||||  | ||| | ||| ||||||||||||||    
T  48362030 ttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaa 48362128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 35777604 - 35777552
Alignment:
Q  421 ctaatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaa 473  Q
    ||||||||||| | || ||| ||||||||||||||||||||||  ||||||||    
T  35777604 ctaatattgttgtcatgtatataggtgtgcaaagtataaattgtgggaagaaa 35777552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 9443076 - 9442938
Alignment:
Q  7 tatggattcaaagtttttcgaatccatgggattcaatcaaagttttttcaagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaag 106  Q
    ||||| ||||||||||||||||| ||||||| ||    ||| | |||| ||||||| |  || |||||||||||||| ||||||||||||||  ||||||    
T  9443076 tatgggttcaaagtttttcgaattcatgggagtcggaaaaattattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaag 9442977  T
Q  107 gagacaatattcatgtgctaaatatccactcaaggtaaa 145  Q
    ||| ||||||| | || || |||||||||||||||||||    
T  9442976 gagtcaatattgaggttctgaatatccactcaaggtaaa 9442938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 5130726 - 5130638
Alignment:
Q  56 aagtaattcctcatattccaagtctaatctcattgaaggatgtcgtgaaaggagacaatattcatgtgctaaatatccactcaaggtaa 144  Q
    |||||||||| |||||| |||||||||| ||| | |||||| | |||||||||||||||||| | ||||| ||||| ||||||||||||    
T  5130726 aagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaa 5130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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