View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_83 (Length: 349)
Name: NF0214_low_83
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 18892806 - 18892539
Alignment:
| Q |
68 |
aagagggctgacaatttttcattttcattgatgagcatcataatatagacatcacatacaaaactaaattcaagcacacttaactattcggggtaaaaat |
167 |
Q |
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| T |
18892806 |
aagagggctgacaattttttattttcattgatgagcatcataatatagacatcacatacaaaactaaattcaagcacgcttaactattcagggtaaaaat |
18892707 |
T |
|
| Q |
168 |
aagtagacacattagaatctatcttgctctccttatcaccatcgttttcctttggagtcataccaacacaatccccaccaatcttctcctcctcatcaat |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18892706 |
aagtagacacattagaatctatcttgctctccttatcaccatcgttttcctttggagtca---caacacaatccccaccaatcttctcctcctcatcaat |
18892610 |
T |
|
| Q |
268 |
tctaagacccaacttcaaaacagtagttttagaaatagcaagacaaagtccctaataggcttttcattcat |
338 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18892609 |
tctaagacccaacttcaaatcagtagttttagaaatagcaagacaaagtccctaataggcttttcattcat |
18892539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 85 - 338
Target Start/End: Complemental strand, 49264696 - 49264443
Alignment:
| Q |
85 |
ttcattttcattgatgagcatcataatatagacatcacatacaaaactaaattcaagcacacttaactattcggggtaaaaataagtagacacattagaa |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||| ||||||||||| |
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| T |
49264696 |
ttcattttcattgatgagcatcataatatagacatcacatacaaaactaaattcaaacactcttaactattcaggataaaaataagtaaacacattagaa |
49264597 |
T |
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| Q |
185 |
tctatcttgctctccttatcaccatcgttttcctttggagtcataccaacacaatccccaccaatcttctcctcctcatcaattctaagacccaacttca |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49264596 |
tctatcttgctctccttatcaccatcgttttcctttggagtcataccaacacaatccccaccaatcttct---cctcatcaattctaagacccaacttca |
49264500 |
T |
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| Q |
285 |
aaacagtagt---tttagaaatagcaagacaaagtccctaataggcttttcattcat |
338 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49264499 |
aaacagtagttaatttagaaatagcaagacaaagtccctaataggcttttcattcat |
49264443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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