View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_low_84 (Length: 349)

Name: NF0214_low_84
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_low_84
NF0214_low_84
[»] chr7 (1 HSPs)
chr7 (12-193)||(45415917-45416098)
[»] chr2 (3 HSPs)
chr2 (197-277)||(6579504-6579585)
chr2 (190-299)||(40359909-40360017)
chr2 (248-302)||(15579725-15579779)
[»] chr6 (1 HSPs)
chr6 (116-193)||(15441923-15441999)
[»] chr8 (1 HSPs)
chr8 (197-302)||(4990317-4990422)
[»] chr5 (1 HSPs)
chr5 (197-300)||(14621397-14621500)
[»] chr3 (2 HSPs)
chr3 (248-302)||(48149723-48149777)
chr3 (248-302)||(42440213-42440267)
[»] scaffold0005 (1 HSPs)
scaffold0005 (196-297)||(198153-198254)
[»] chr4 (1 HSPs)
chr4 (196-297)||(14619123-14619224)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 45415917 - 45416098
Alignment:
Q  12 aagaagtgatagtaataatcaacaaaaacaaacaataattaattccaaaatcaacaagagtcaagaaattatacttatgtagcacttagatggacaattt 111  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45415917 aagaagtgatattaataatcaacaagaacaaacaataattaattccaaaatcaacaagagtcaagaaattatacttatgtagcgcttagatggacaattt 45416016  T
Q  112 tacttgtttgttacaaagcaaacaacgcgcacgaaatgcacgacactgtatttttcactcaattgcacatgattttcgttaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  45416017 tacttgtttgttacaaagcaaacaacgcgcacgaaatgcacgacactgtatttttcacccaatttcacatgattttcgttaa 45416098  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 6579504 - 6579585
Alignment:
Q  197 aaatgatgaaatgcacgacaaaatttgtcgtcaaatgtgtacgaataacattatagttgttatttagtttt-ttctcttaaa 277  Q
    ||||||| |||||| ||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||    
T  6579504 aaatgataaaatgcgcgatagaatttgtcgtcaaatttgtacgaataactttatagttgttatttagttttcttctcttaaa 6579585  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 40359909 - 40360017
Alignment:
Q  190 ttaagggaaatgatgaaatgcacgacaaaatttgtcgtcaaatgtgtacgaataacattatagttgttatttagttttttctcttaaatttgttttgacc 289  Q
    |||||| |||||||||||| ||||| || |||||||||||||| || |||||| || ||||| || | ||||||||||||||||| | ||| | ||||||    
T  40359909 ttaaggaaaatgatgaaattcacgataatatttgtcgtcaaatatgcacgaatgactttataattctcatttagttttttctcttgacttt-tattgacc 40360007  T
Q  290 caaaatgata 299  Q
    ||||||||||    
T  40360008 caaaatgata 40360017  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 15579779 - 15579725
Alignment:
Q  248 tatagttgttatttagttttttctcttaaatttgttttgacccaaaatgataaat 302  Q
    |||||| || |||||| |||||||||||| |||| ||||| ||||||||||||||    
T  15579779 tatagtcgtcatttagctttttctcttaactttgatttgatccaaaatgataaat 15579725  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 15441999 - 15441923
Alignment:
Q  116 tgtttgttacaaagcaaacaacgcgcacgaaatgcacgacactgtatttttcactcaattgcacatgattttcgttaa 193  Q
    ||||| |||||||||||||||| |||| |||| |||||||| |||| |||||||||||||||||||||||| ||||||    
T  15441999 tgtttattacaaagcaaacaacacgcatgaaaggcacgacagtgta-ttttcactcaattgcacatgatttccgttaa 15441923  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 4990317 - 4990422
Alignment:
Q  197 aaatgatgaaatgcacgacaaaatttgtcgtcaaatgtgtacgaataacattatagttgttatttagttttttctcttaaatttgttttgacccaaaatg 296  Q
    ||||||| ||||||||||||| |||||||||  ||| |||||||||     ||||||||| |||||  |||||||||||| |||| ||||| ||||||||    
T  4990317 aaatgatcaaatgcacgacaatatttgtcgtggaatatgtacgaatggttctatagttgtcatttaactttttctcttaactttgatttgatccaaaatg 4990416  T
Q  297 ataaat 302  Q
    ||||||    
T  4990417 ataaat 4990422  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 14621397 - 14621500
Alignment:
Q  197 aaatgatgaaatgcacgacaaaatttgtcgtcaaatgtgtacgaataacattatagttgttatttagttttttctcttaaatttgttttgacccaaaatg 296  Q
    ||||||| |||||||||  || ||||||||   ||| ||||||| |  | |||||||||| |||||| |||||||||||| |||| ||||| ||||||||    
T  14621397 aaatgatcaaatgcacggtaatatttgtcgctgaatatgtacgagtggctttatagttgtcatttagctttttctcttaactttgatttgatccaaaatg 14621496  T
Q  297 ataa 300  Q
    ||||    
T  14621497 ataa 14621500  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 48149723 - 48149777
Alignment:
Q  248 tatagttgttatttagttttttctcttaaatttgttttgacccaaaatgataaat 302  Q
    ||||||||| |||||| |||||||||||| |||| ||||| ||||||||||||||    
T  48149723 tatagttgtcatttagctttttctcttaactttgatttgatccaaaatgataaat 48149777  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 42440267 - 42440213
Alignment:
Q  248 tatagttgttatttagttttttctcttaaatttgttttgacccaaaatgataaat 302  Q
    |||||| || |||||| |||||||||||| |||| ||||| ||||||||||||||    
T  42440267 tatagtcgtcatttagctttttctcttaactttgatttgatccaaaatgataaat 42440213  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 198254 - 198153
Alignment:
Q  196 gaaatgatgaaatgcacgacaaaatttgtcgtcaaatgtgtacgaataacattatagttgttatttagttttttctcttaaatttgttttgacccaaaat 295  Q
    |||||| ||||| ||||||||| ||||||||||| || || ||||| ||   |||| ||||||||||||| ||| |||||| |||  |||||| ||||||    
T  198254 gaaatgctgaaacgcacgacaacatttgtcgtcatatttgcacgaacaaatgtatatttgttatttagttctttatcttaattttaatttgacacaaaat 198155  T
Q  296 ga 297  Q
    ||    
T  198154 ga 198153  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 14619123 - 14619224
Alignment:
Q  196 gaaatgatgaaatgcacgacaaaatttgtcgtcaaatgtgtacgaataacattatagttgttatttagttttttctcttaaatttgttttgacccaaaat 295  Q
    |||||| ||||| ||||||||| ||||||||||| || || ||||| ||   |||| ||||||||||||| ||| |||||| |||  |||||| ||||||    
T  14619123 gaaatgctgaaacgcacgacaacatttgtcgtcatatttgcacgaacaaatgtatatttgttatttagttctttatcttaattttaatttgacacaaaat 14619222  T
Q  296 ga 297  Q
    ||    
T  14619223 ga 14619224  T

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