View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_86 (Length: 339)
Name: NF0214_low_86
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_86 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 329
Target Start/End: Original strand, 982958 - 983257
Alignment:
| Q |
30 |
gtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtgaa |
129 |
Q |
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| T |
982958 |
gtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatgaa |
983057 |
T |
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| Q |
130 |
ctgaactgctatggtaaattaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacatttgctacaaaataaagtatataggtattt |
229 |
Q |
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| T |
983058 |
ctgaactgctatggtaaattaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacatttgctacaaaataaagtatataggtattt |
983157 |
T |
|
| Q |
230 |
tatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaatttcctatg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
983158 |
tatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagtatcttgtgtcttggtcatgcattcaaatttcctatg |
983257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
224 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
323 |
Q |
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||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
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| Q |
324 |
cctatgct |
331 |
Q |
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||| |||| |
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| T |
40413324 |
cctttgct |
40413331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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