View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_88 (Length: 333)
Name: NF0214_low_88
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 433493 - 433364
Alignment:
| Q |
164 |
aactaacattatcttgaagaagattatgatcgacggagtttgagagaatagtagtaagccttcgactattcctttgcatcaacaaccttcttctacacca |
263 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
433493 |
aactaacattatcttgaagaagatgatgatcgacggagtttgagagagtagtagtaagccttcgactattcctttgcatcaacaaacttcttctacacca |
433394 |
T |
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| Q |
264 |
ttgcatcatcgtcgtcatcgcttttacttt |
293 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
433393 |
ttgcatcatcgtcgtcatcgcttttacttt |
433364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 433623 - 433544
Alignment:
| Q |
29 |
aggaaggtctgttaagaagagcgagtctggagtaaccatttccttcaaccaaaacctgttgagattgaaattgaaattga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
433623 |
aggaaggtctgttaagaagagcgagtctggagtaaccatttccttcaaccaaaacctgttgagattgagattgaaattga |
433544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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