View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_89 (Length: 333)
Name: NF0214_low_89
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 48600506 - 48600427
Alignment:
| Q |
98 |
caatgctctcaagatcactcttctccttctccttgtttccgctattgttgtcgcttgctttactctcccaattgaaaagg |
177 |
Q |
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| T |
48600506 |
caatgctctcaagatcactcttctccttctccttgtttccgctattgttgtcgcttgctttactctcccaattgaaaagg |
48600427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 266
Target Start/End: Complemental strand, 48600373 - 48600338
Alignment:
| Q |
231 |
attatcgttcatgatgttctaatggggtgacttcat |
266 |
Q |
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| T |
48600373 |
attatcgttcatgatgttctaatggggtgacttcat |
48600338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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