View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_low_91 (Length: 329)
Name: NF0214_low_91
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 33585664 - 33585963
Alignment:
| Q |
6 |
aggagcagagattgaacagacctcagtgattgtgaaggtggccatggtttgatctcatgaacatggatgatatagttaacttgaattgaatctgaaacag |
105 |
Q |
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| T |
33585664 |
aggagcacagattgaacagacctcagtgattgtgaaggtggccatggtttgatctcatgaacatggatgatgtagttaacttgaattgaatctgaaacag |
33585763 |
T |
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| Q |
106 |
tttttctactctttgttcttattcccaataccatcttcaccaaaaattaaccagtgctattattctttgttgctaaatgatgaaacaaaaacacagaaac |
205 |
Q |
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| T |
33585764 |
tttttctactctttgttcttattcccaataccatcttcaccaaaaattaaccagtgctattattctttgttgctaaatgatgaaacaaaaacacagaaac |
33585863 |
T |
|
| Q |
206 |
aaaagttagatnnnnnnnnnnngaaaaggatggtctaatacatttcacacatacttaacttccataattaacataaataatttagttagttaaaatgatg |
305 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33585864 |
aaaagttagataaaaaaaa----aaagggatggtctaatacatttcacacatacttaacttccataattaacataaataatttagttagttaaaatgatg |
33585959 |
T |
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