View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_low_96 (Length: 319)
Name: NF0214_low_96
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_low_96
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 34704779 - 34704640
Alignment:
Q
101
ttagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctagggctcaactttcatgcatttgagcttcatcgctttgacagg
200
Q
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
T
34704779
ttagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcaccgctttgacagg
34704680
T
Q
201
ctttgtggcagattcctcaccatccagctcatataccgtc
240
Q
||||||||||||||||||||||||||||||||||||||||
T
34704679
ctttgtggcagattcctcaccatccagctcatataccgtc
34704640
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 28548422 - 28548561
Alignment:
Q
101
ttagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctagggctcaactttcatgcatttgagcttcatcgctttgacagg
200
Q
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
T
28548422
ttagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcaccgctttgacagg
28548521
T
Q
201
ctttgtggcagattcctcaccatccagctcatataccgtc
240
Q
||||||||||||||||||||||||||||||||||||||||
T
28548522
ctttgtggcagattcctcaccatccagctcatataccgtc
28548561
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 41867988 - 41867849
Alignment:
Q
101
ttagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctagggctcaactttcatgcatttgagcttcatcgctttgacagg
200
Q
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
T
41867988
ttagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcaccgctttgacagg
41867889
T
Q
201
ctttgtggcagattcctcaccatccagctcatataccgtc
240
Q
||||||||||||||||||||||||||||||||||||||||
T
41867888
ctttgtggcagattcctcaccatccagctcatataccgtc
41867849
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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