View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0215-INSERTION-8 (Length: 674)
Name: NF0215-INSERTION-8
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0215-INSERTION-8
Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 36139528 - 36139954
Alignment:
Q
7
aagctacaggctacattggctgaagaacatctcaatgctgcttgtgacctgaaaaagacctgtgaaacagttgcattgcttgaagcacaactgaaagaga
106
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
36139528
aagctacaggctacattggctgaagaacatctcaatgctgcttgtgacctgaaaaagacctgtgaaacagttgcattgcttgaagcacaactgaaagaga
36139627
T
Q
107
tgaatccaaatcttgattcaattgcagagtatggccttttccaatttgttatcctgattgtcttcctttttggtgttgcactgaagtgtttcttaattta
206
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
36139628
tgaatccaaatcttgattcaattgcagagtatggccttttccaatttgttatcctgactgtcttcctttttggtgttgcactgaagtgtttcttaattta
36139727
T
Q
207
tgatatcagatatcggaagaaggtatcattgtacagtgagcgagttgaagaacttaatgcagtcactcgggagcgggatgatataaagaagcaatatgat
306
Q
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
36139728
tgatatcagatatcggaagaaggtatcattgcacagtgagcgagttgaagaacttaatgcagtcactcgggagcgggatgatataaagaagcaatatgat
36139827
T
Q
307
gaattgagaaagaagaggtgtgcaggttatttattttgtattgttgacttgctttattattttctatttgtgaaaaatgtaagctgaatctttcatttca
406
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
36139828
gaattgagaaagaagaggtgtgcaggttatttattttgtattgttgacttgctttattattttctatttgtgaaaaatgtaagctgaatctttcatttca
36139927
T
Q
407
gattggatgagtttatggaaggattta
433
Q
|||||||||||||||||||||||||||
T
36139928
gattggatgagtttatggaaggattta
36139954
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 518 - 666
Target Start/End: Original strand, 36139955 - 36140103
Alignment:
Q
518
ttgtgctttgctctgcagttcattgtgcttttaacttgttatatatctaataaacttaacatatttggattgcatgacttctgataacagtgaagttgtg
617
Q
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
36139955
ttgtgctttgctctgcagttcactgtgcttttaacttgttatatatctaataaacttaacatatttggattgcatgacttctgataacagtgaagttgtg
36140054
T
Q
618
ttttaaatgcattgccacttacaacttggtggtaagccagaaaagtgtg
666
Q
|||||||||||||||||||||||||||||||||||||||||||||||||
T
36140055
ttttaaatgcattgccacttacaacttggtggtaagccagaaaagtgtg
36140103
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Original strand, 30820224 - 30820700
Alignment:
Q
7
aagctacaggctacattggctgaagaacatctcaatgctgcttgtgacctgaaaaagacctgtgaaacagttgcattgcttgaagcacaactgaaagaga
106
Q
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||
T
30820224
aagctacatgctacattgactgaagaacatctcaatgctgcttgtgacctgaaaaaggcctgtgaaacggtagcattgcttgaagctcaactgaaagaga
30820323
T
Q
107
tgaatccaaatcttgattcaattgcagagtatggccttttccaatttgttatcctgattgtcttcctttttggtgttgcactgaagtgtttcttaattta
206
Q
||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
T
30820324
tgaatccaaatcttgattcaattgcagagtagggcatttcccaatttattatcctgactggcttcctttttggtgttgcactgaagtgtttcttaattta
30820423
T
Q
207
tgatatcagatatcggaagaaggtatcattgtacagtgagcgagttgaagaacttaatgcagtcactcgggagcgggatgatataaagaagcaatatgat
306
Q
||||||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
T
30820424
tgatatcaggtatcgcaagaaggtagcattgtacaatgagcgagttgaagaacttaatgcagtcactcaggagcgagatgatataaagaagcaacatgat
30820523
T
Q
307
gaattgagaaagaagaggtgtgcaggttatttattttgtattgttgacttgctttattattttctatttgtgaaaaatgtaagctgaatctttcatttca
406
Q
||||||||||||| |||||||||| | |||| |||||||| ||||| | ||||| |||| ||||||||||||||| |||||||||||||| ||||||
T
30820524
gaattgagaaagaggaggtgtgcatgcaatttcttttgtatcattgac-tattttatgatttcctatttgtgaaaaatttaagctgaatctttaatttca
30820622
T
Q
407
gattggatgagtttatggaaggatttaatgccatatcattaaagttaaaggaaatgtaccaggtttggaaatcccctc
484
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
T
30820623
gattggatgagtttatggaaggatttaatgccatatcattaaagttaaaggaaatgtaccaggtatggaaatcccctc
30820700
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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