View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0215-INSERTION-8 (Length: 674)
Name: NF0215-INSERTION-8
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0215-INSERTION-8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 36139528 - 36139954
Alignment:
| Q |
7 |
aagctacaggctacattggctgaagaacatctcaatgctgcttgtgacctgaaaaagacctgtgaaacagttgcattgcttgaagcacaactgaaagaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36139528 |
aagctacaggctacattggctgaagaacatctcaatgctgcttgtgacctgaaaaagacctgtgaaacagttgcattgcttgaagcacaactgaaagaga |
36139627 |
T |
|
| Q |
107 |
tgaatccaaatcttgattcaattgcagagtatggccttttccaatttgttatcctgattgtcttcctttttggtgttgcactgaagtgtttcttaattta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36139628 |
tgaatccaaatcttgattcaattgcagagtatggccttttccaatttgttatcctgactgtcttcctttttggtgttgcactgaagtgtttcttaattta |
36139727 |
T |
|
| Q |
207 |
tgatatcagatatcggaagaaggtatcattgtacagtgagcgagttgaagaacttaatgcagtcactcgggagcgggatgatataaagaagcaatatgat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36139728 |
tgatatcagatatcggaagaaggtatcattgcacagtgagcgagttgaagaacttaatgcagtcactcgggagcgggatgatataaagaagcaatatgat |
36139827 |
T |
|
| Q |
307 |
gaattgagaaagaagaggtgtgcaggttatttattttgtattgttgacttgctttattattttctatttgtgaaaaatgtaagctgaatctttcatttca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36139828 |
gaattgagaaagaagaggtgtgcaggttatttattttgtattgttgacttgctttattattttctatttgtgaaaaatgtaagctgaatctttcatttca |
36139927 |
T |
|
| Q |
407 |
gattggatgagtttatggaaggattta |
433 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36139928 |
gattggatgagtttatggaaggattta |
36139954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 518 - 666
Target Start/End: Original strand, 36139955 - 36140103
Alignment:
| Q |
518 |
ttgtgctttgctctgcagttcattgtgcttttaacttgttatatatctaataaacttaacatatttggattgcatgacttctgataacagtgaagttgtg |
617 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36139955 |
ttgtgctttgctctgcagttcactgtgcttttaacttgttatatatctaataaacttaacatatttggattgcatgacttctgataacagtgaagttgtg |
36140054 |
T |
|
| Q |
618 |
ttttaaatgcattgccacttacaacttggtggtaagccagaaaagtgtg |
666 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36140055 |
ttttaaatgcattgccacttacaacttggtggtaagccagaaaagtgtg |
36140103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Original strand, 30820224 - 30820700
Alignment:
| Q |
7 |
aagctacaggctacattggctgaagaacatctcaatgctgcttgtgacctgaaaaagacctgtgaaacagttgcattgcttgaagcacaactgaaagaga |
106 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
30820224 |
aagctacatgctacattgactgaagaacatctcaatgctgcttgtgacctgaaaaaggcctgtgaaacggtagcattgcttgaagctcaactgaaagaga |
30820323 |
T |
|
| Q |
107 |
tgaatccaaatcttgattcaattgcagagtatggccttttccaatttgttatcctgattgtcttcctttttggtgttgcactgaagtgtttcttaattta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30820324 |
tgaatccaaatcttgattcaattgcagagtagggcatttcccaatttattatcctgactggcttcctttttggtgttgcactgaagtgtttcttaattta |
30820423 |
T |
|
| Q |
207 |
tgatatcagatatcggaagaaggtatcattgtacagtgagcgagttgaagaacttaatgcagtcactcgggagcgggatgatataaagaagcaatatgat |
306 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
30820424 |
tgatatcaggtatcgcaagaaggtagcattgtacaatgagcgagttgaagaacttaatgcagtcactcaggagcgagatgatataaagaagcaacatgat |
30820523 |
T |
|
| Q |
307 |
gaattgagaaagaagaggtgtgcaggttatttattttgtattgttgacttgctttattattttctatttgtgaaaaatgtaagctgaatctttcatttca |
406 |
Q |
| |
|
||||||||||||| |||||||||| | |||| |||||||| ||||| | ||||| |||| ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
30820524 |
gaattgagaaagaggaggtgtgcatgcaatttcttttgtatcattgac-tattttatgatttcctatttgtgaaaaatttaagctgaatctttaatttca |
30820622 |
T |
|
| Q |
407 |
gattggatgagtttatggaaggatttaatgccatatcattaaagttaaaggaaatgtaccaggtttggaaatcccctc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30820623 |
gattggatgagtttatggaaggatttaatgccatatcattaaagttaaaggaaatgtaccaggtatggaaatcccctc |
30820700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University