View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0215-INSERTION-9 (Length: 529)

Name: NF0215-INSERTION-9
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0215-INSERTION-9
NF0215-INSERTION-9
[»] chr7 (4 HSPs)
chr7 (9-494)||(20621869-20622354)
chr7 (9-252)||(20602880-20603123)
chr7 (327-494)||(20603168-20603335)
chr7 (363-399)||(20603122-20603158)
[»] chr5 (5 HSPs)
chr5 (16-236)||(25834799-25835019)
chr5 (322-490)||(25834374-25834542)
chr5 (20-250)||(31201498-31201728)
chr5 (81-250)||(41349394-41349563)
chr5 (391-456)||(31161487-31161552)
[»] chr6 (3 HSPs)
chr6 (16-249)||(2328552-2328785)
chr6 (19-247)||(14264766-14264994)
chr6 (334-473)||(14265062-14265201)
[»] chr4 (2 HSPs)
chr4 (37-247)||(17183098-17183308)
chr4 (329-378)||(17182425-17182474)
[»] chr3 (1 HSPs)
chr3 (91-249)||(25794182-25794340)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 20621869 - 20622354
Alignment:
Q  9 agaatccgtgtagttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggccta 108  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  20621869 agaatctgtgtagttatcttcgtttttgtaaacaacatccataaaacgcgaaaggttaagaacacaagtcataaaaggcattggaactttggttggccta 20621968  T
Q  109 agacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20621969 agacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctcgacatatcaaattgcttcatataacaat 20622068  T
Q  209 ctaacaatgagcaaacatgtcctcttttctgttcaaactatacaatagaaaataaataatacaagtggtcatttcgagtgaaagaaaacaataatatgtt 308  Q
    |||||||||||||||| || ||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  20622069 ctaacaatgagcaaacttgccctcttttctgttcaaacagtacaatagaaaataaataatgcaagtggtcatttcgagtgaaagaaagcaattatatgtt 20622168  T
Q  309 agtgagaagttaattttgatattttataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctca 408  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20622169 agtgagaagttaattttgatatttcataaatacctcgttggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctca 20622268  T
Q  409 tttgatacccaattgaagatctcctttgtggctatatcacccatgccagtgtaagaggttaatatcagtaaagggtaagcacctga 494  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  20622269 tttgatacccaattgaagatctcctttgtggctatgtcacccataccaatgtaagaggttaatatcagcaaagggtaagcacctga 20622354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 20602880 - 20603123
Alignment:
Q  9 agaatccgtgtagttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggccta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  20602880 agaatccgtgtagttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacaaatcataaaaggcattggaactttggttggccta 20602979  T
Q  109 agacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20602980 agacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaat 20603079  T
Q  209 ctaacaatgagcaaacatgtcctcttttctgttcaaactataca 252  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  20603080 ctaacaatgagcaaacatgtcctcttttctgttcaaactgtaca 20603123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 327 - 494
Target Start/End: Original strand, 20603168 - 20603335
Alignment:
Q  327 atattttataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaattgaag 426  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20603168 atattttataaatacctcactggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaaatgaag 20603267  T
Q  427 atctcctttgtggctatatcacccatgccagtgtaagaggttaatatcagtaaagggtaagcacctga 494  Q
    ||||||||||||| ||| |||||||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  20603268 atctcctttgtggatatgtcacccataccaatgtaagaagttaatatcagcaaagggtaagcacctga 20603335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 20603122 - 20603158
Alignment:
Q  363 cattagcctgcaaagagttgcagcggcgttaacaatt 399  Q
    |||||||||||||||||||||||||||||||||||||    
T  20603122 cattagcctgcaaagagttgcagcggcgttaacaatt 20603158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 25835019 - 25834799
Alignment:
Q  16 gtgtagttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggcctaagacatt 115  Q
    ||||| || ||||| | ||||||| | ||||||||||||||||||| ||||||| ||||| | | |||||||||||||||||||||||||||||||||||    
T  25835019 gtgtaattgtctttatctttgtaattcacatccataaaacgcgaaaaattgagagcacgaataagaaaaggcattggaactttggttggcctaagacatt 25834920  T
Q  116 cttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaa 215  Q
    | |||||||||||||||||| ||||||  ||||  || | ||||||||||||||||||||| |||||||||||| | |||||||| || ||||| |||||    
T  25834919 cctcatttatatctttccaagcaattgcaattcccttatggcattcttgaatagcagcttccctagacatatcatactgcttcatgtagcaatccaacaa 25834820  T
Q  216 tgagcaaacatgtcctctttt 236  Q
    ||||||||||||| |||||||    
T  25834819 tgagcaaacatgttctctttt 25834799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 322 - 490
Target Start/End: Complemental strand, 25834542 - 25834374
Alignment:
Q  322 ttttgatattttataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaat 421  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||| |||||||||| | || |||||  |||||||| |||| ||||||| ||||||||    
T  25834542 ttttgatatattttaaatacctcactggagacaatttcatccattaacctgcaaagattggctgcggcactaacaatttttgggtcatttgttacccaat 25834443  T
Q  422 tgaagatctcctttgtggctatatcacccatgccagtgtaagaggttaatatcagtaaagggtaagcac 490  Q
    ||||||| | || |||||   | || ||||| ||| ||||||| ||||||||||  |||| ||||||||    
T  25834442 tgaagatgttctctgtggtattttctcccatcccaatgtaagaagttaatatcaacaaagtgtaagcac 25834374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 31201728 - 31201498
Alignment:
Q  20 agttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggcctaagacattcttc 119  Q
    |||||||||| | ||| ||||  |||||||||||||| || ||||| ||||  || || | |||||||||||||||||  ||||| |||| |||||| |     
T  31201728 agttatctttatctttataaacgacatccataaaacgtgacagatttagaatgcgtgtaagaaaaggcattggaacttcagttggtctaaaacattcctt 31201629  T
Q  120 atttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgag 219  Q
    ||| |||||||||||| ||   |  |||||||||   | ||||||||| |||||||| ||||| | || | ||||| ||||||| || || || ||||||    
T  31201628 attcatatctttccaagcatcagcaattctatttcgaccttcttgaatggcagcttccctagagacattatattgcctcatatagcattccaagaatgag 31201529  T
Q  220 caaacatgtcctcttttctgttcaaactata 250  Q
      ||||||| ||||||  |||||||||||||    
T  31201528 gtaacatgttctctttcttgttcaaactata 31201498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 41349394 - 41349563
Alignment:
Q  81 aaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctcta 180  Q
    ||||||||||| ||| | ||||| | |||||||||||| ||| |||||||||||| ||  |   ||||| |||   | ||||||||| ||| ||||||||    
T  41349394 aaaaggcattgaaacctcggttgacataagacattctttattaatatctttccaagcatctacaattctctttcgaccttcttgaatggcaacttctcta 41349493  T
Q  181 gacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaactata 250  Q
    || |||| | ||||| ||||||| || || || |||||| |||||||| ||||||| |||||||||||||    
T  41349494 gagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactata 41349563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 31161552 - 31161487
Alignment:
Q  391 ttaacaattcttggctcatttgatacccaattgaagatctcctttgtggctatatcacccatgcca 456  Q
    ||||||||| |||  |||||||||||||| |||| |||||||| ||||| ||| || |||||||||    
T  31161552 ttaacaatttttgtttcatttgatacccacttgatgatctcctctgtggttatgtctcccatgcca 31161487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 2328785 - 2328552
Alignment:
Q  16 gtgtagttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggcctaagacatt 115  Q
    |||||||||||||  | ||||||||  |||||||||||||||| ||| |||||| | || || | ||| |||||||||||||||||||||||||||||||    
T  2328785 gtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacatt 2328686  T
Q  116 cttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaa 215  Q
    |   ||||| | |||||||| ||||||  |||   |||||||||||||||||||||||||| || |||||| || ||||||||||||| ||||| | |||    
T  2328685 ccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttcccttgacataccatattgcttcatatagcaatccagcaa 2328586  T
Q  216 tgagcaaacatgtcctcttttctgttcaaactat 249  Q
    |||||||||||||||||||||  |||||||||||    
T  2328585 tgagcaaacatgtcctcttttacgttcaaactat 2328552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 14264766 - 14264994
Alignment:
Q  19 tagttatctttgtttttgtaaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggcctaagacattctt 118  Q
    ||||||||||| | | ||||||  ||||||||||||||||||| ||||||| | ||||| | ||||  ||||||||||| ||||||||| ||||||||||    
T  14264766 tagttatctttatctgtgtaaaacacatccataaaacgcgaaaaattgagagcgcgagttagaaaatccattggaacttcggttggccttagacattctt 14264865  T
Q  119 catttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatga 218  Q
      ||||||||||||||| | ||||  | ||| |||| ||||||||||||||||||||| |||| |||| || |||| || ||||| ||||| ||||||||    
T  14264866 tgtttatatctttccaagcgattgcaactctcttttggcattcttgaatagcagcttccctagtcataccatattgttttatatagcaatccaacaatga 14264965  T
Q  219 gcaaacatgtcctcttttctgttcaaact 247  Q
    |||||||||||||||||| ||||||||||    
T  14264966 gcaaacatgtcctcttttatgttcaaact 14264994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 473
Target Start/End: Original strand, 14265062 - 14265201
Alignment:
Q  334 ataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaattgaagatctcct 433  Q
    ||||||||||| ||||| |||||||||||||| | ||| || | ||||||||| || ||| ||||  |||||||||| | || |||||||||||| | ||    
T  14265062 ataaatacctcactggacacaatttcatccatcaccctacagatagttgcagcagcattagcaataattggctcattcgttaaccaattgaagatgttct 14265161  T
Q  434 ttgtggctatatcacccatgccagtgtaagaggttaatat 473  Q
     | || || | || ||||||||| ||||||| ||||||||    
T  14265162 ctatgactgtgtctcccatgccaatgtaagaagttaatat 14265201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 17183308 - 17183098
Alignment:
Q  37 taaataacatccataaaacgcgaaagattgagaacacgagtcataaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaa 136  Q
    ||||| ||||||||||||||||| ||||||| ||  ||||| | |||| || ||||||||||||||||| |||||||||||||||||||||||||||||     
T  17183308 taaattacatccataaaacgcgagagattgacaatgcgagttagaaaaagcgttggaactttggttggcttaagacattcttcatttatatctttccaag 17183209  T
Q  137 caattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctctttt 236  Q
    || |    | ||| |||| |||||||||||||| |||||||||||| ||||   ||| ||||||||| || || || |||||| ||||||||||||||||    
T  17183208 cattaacaactcttttttggcattcttgaatagaagcttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctctttt 17183109  T
Q  237 ctgttcaaact 247  Q
     ||||||||||    
T  17183108 atgttcaaact 17183098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 17182474 - 17182425
Alignment:
Q  329 attttataaatacctcgctggaaacaatttcatccattagcctgcaaaga 378  Q
    |||||||  ||||||||||||| ||||| |||||||||||||| ||||||    
T  17182474 attttatgtatacctcgctggacacaatgtcatccattagcctacaaaga 17182425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 25794340 - 25794182
Alignment:
Q  91 ggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctagacatatcaa 190  Q
    |||||||  |||||| ||||||||||||||||||||||||||||| ||      ||||| |||  || ||||||||| |||||||| ||||||| ||||     
T  25794340 ggaacttcagttggcataagacattcttcatttatatctttccaagcatcaagaattctctttcggccttcttgaatggcagcttccctagacacatcat 25794241  T
Q  191 attgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaactat 249  Q
    |||  ||||||||||| || |  |||||| |||||||| ||||||| ||||||||||||    
T  25794240 attctttcatataacactccaggaatgaggaaacatgttctcttttttgttcaaactat 25794182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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