View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0215_low_10 (Length: 214)
Name: NF0215_low_10
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0215_low_10 |
 | |
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| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] scaffold0955 (1 HSPs) |
| | |
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| [»] scaffold0864 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 25383940 - 25383739
Alignment:
| Q |
1 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25383940 |
ataacttcctaattggtgtcgaacatgaaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcaca |
25383841 |
T |
|
| Q |
101 |
acttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25383840 |
acttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacata----gttgcttcatcgatcgccttgagaagtggttgtgatattt |
25383745 |
T |
|
| Q |
201 |
catctc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
25383744 |
catctc |
25383739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 25692264 - 25692059
Alignment:
| Q |
1 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
25692264 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtataatttgccgtttgttttttctacactcgagtattttcaca |
25692165 |
T |
|
| Q |
101 |
acttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
25692164 |
acttcatccaaacaccattttgaagttgcatagttttttgaaaaaacaatcacaaatagttttgcttcatcgatcgccttgagaagtgcttgcgatattt |
25692065 |
T |
|
| Q |
201 |
catctc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
25692064 |
catctc |
25692059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 25645814 - 25645610
Alignment:
| Q |
1 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| | ||| | |||||||||||||||||||||||||||| |||||| |
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|
| T |
25645814 |
ataacttcctaattggtgtcgaacatggaaaggatcgacttcataaaaaactggcaatataagccgccctttgttttttctacactcgagtattttcaca |
25645715 |
T |
|
| Q |
101 |
acttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
25645714 |
acttcatccaaacaccattttgaagttgcatagt-ttttgaaaaaacaatcacataaagttttgcttcatcgatcgccttgagaagcgcttgtgatattt |
25645616 |
T |
|
| Q |
201 |
catctc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
25645615 |
catctc |
25645610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 25388597 - 25388396
Alignment:
| Q |
1 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcaca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
25388597 |
ataacttcctaattggtgtcaaacatggaaaggatcaacttcataaaaaactgggaatataatttgccctttgtgttttctacactcgagtattttcaca |
25388498 |
T |
|
| Q |
101 |
acttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| ||| | |||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
25388497 |
acttcatccaaacaccattttgaagttgcataattttttggaaaaacaa----agaaagttttgcttcatcgatcgccttgagaaacgcttgtgatattt |
25388402 |
T |
|
| Q |
201 |
catctc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
25388401 |
catctc |
25388396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 25450977 - 25450879
Alignment:
| Q |
103 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatttc |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25450977 |
ttcatccaagcaccattttgaagttgcatagtttttcgaaaaaataatcacagaaagttttgcttcatcgatcgccttgagaagtgcttgtgatatttc |
25450879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 6145602 - 6145640
Alignment:
| Q |
103 |
ttcatccaaacaccattttgaagttgcatagttttttga |
141 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6145602 |
ttcatccaaacaccactttgaagttgcatagtcttttga |
6145640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 19656 - 19860
Alignment:
| Q |
1 |
ataacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
19656 |
ataacttcctaattggtgtcgaacatggaaaggatcgacttcatagaaaactggcactataatttaccctttgttttttctacactcgactattttcaca |
19755 |
T |
|
| Q |
101 |
acttcatccaaacaccattttgaagttgcatagtttttt-gaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
19756 |
acttcatccaaacaccattttgaagttgcatagttttttcgaaaagacaatcacagaaagttttgcttcatcgatcgccttgagaagcgcttgtgatatt |
19855 |
T |
|
| Q |
200 |
tcatc |
204 |
Q |
| |
|
||||| |
|
|
| T |
19856 |
tcatc |
19860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 39173 - 39376
Alignment:
| Q |
3 |
aacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcacaac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
39173 |
aacttcctaattggtgtcgaacatggaaaggatcaacttcataaaaaactggcaatataatttgttctttgtattttctacactcgagtattttcacaac |
39272 |
T |
|
| Q |
103 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatttca |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
39273 |
ttcatccaaacactattttgaagttgcatagttttttgaaaaaacaatcacagaaagttttgcctcatcgattgccttgagaagcgcttgtgatatttca |
39372 |
T |
|
| Q |
203 |
tctc |
206 |
Q |
| |
|
|||| |
|
|
| T |
39373 |
tctc |
39376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 3272 - 3069
Alignment:
| Q |
3 |
aacttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggaagtatcatttgccctttgttttttctacactcgagtatcttcacaac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||| |||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
3272 |
aacttcctaattggtgtcgaacatggaaaggatcaacttcataaaaatctggcaatataatttgctctttgtattttctacactcgagtattttcacaac |
3173 |
T |
|
| Q |
103 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtggttgtgatatttca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||| | ||||||||||||| |
|
|
| T |
3172 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaaacaatcacagaaagttttgcctcatcgatttccttgagaagcgcttgtgatatttca |
3073 |
T |
|
| Q |
203 |
tctc |
206 |
Q |
| |
|
|||| |
|
|
| T |
3072 |
tctc |
3069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 16502653 - 16502768
Alignment:
| Q |
89 |
agtatcttcacaacttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaatcacataaagttttgcttcatcgatcgccttgagaagtg |
188 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||| | |||||||||| || ||| ||| |||| |||| |||| ||| ||||| ||| | ||||||| |
|
|
| T |
16502653 |
agtattttcacaagttcatccaaacaccactttgaattagcatagttttcagacaaaacaaccacagaaagctttgattcctcgattgccctaagaagtg |
16502752 |
T |
|
| Q |
189 |
gttgtgatatttcatc |
204 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
16502753 |
cgtttgatatttcatc |
16502768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 4487 - 4440
Alignment:
| Q |
103 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaat |
150 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| |||| |
|
|
| T |
4487 |
ttcatccaaacaccattttgaattggcatagttttttgagaaaacaat |
4440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 22589144 - 22589191
Alignment:
| Q |
103 |
ttcatccaaacaccattttgaagttgcatagttttttgaaaaatcaat |
150 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| |||| |
|
|
| T |
22589144 |
ttcatccaaacaccattttgaattggcatagttttttgagaaaacaat |
22589191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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