View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0215_low_11 (Length: 202)
Name: NF0215_low_11
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0215_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 35979840 - 35980023
Alignment:
| Q |
1 |
tagtgttcatttctgtggatacaaagcttactatgaagacaatgatgaatatccttgaacctgatttattattatatagac-attcatatttttagatat |
99 |
Q |
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| T |
35979840 |
tagtgttcatttctgtggatacaaagcttactatgaagacaatgatgaatatccttgaacctgatttattattatatagtctattcatatttttagatat |
35979939 |
T |
|
| Q |
100 |
ttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcatattagcccagattagtctatatgtcatcctagtc |
183 |
Q |
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| T |
35979940 |
ttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcatattagcccagattagtctatttgtcatcctagtc |
35980023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 1395033 - 1395184
Alignment:
| Q |
5 |
gttcatttctgtggatacaaagcttactatgaagacaatgatga---atatccttgaacctgatttattattatatagac-attcatatttttag---at |
97 |
Q |
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|||||||| ||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||||| || |
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| T |
1395033 |
gttcatttatgtggatacaaagcttattaagaagagaatgatgatgaatatccttcaacctgatttattattatatagtttattcatatttttagttgat |
1395132 |
T |
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| Q |
98 |
atttttctaagatagtttgttagtgtatttgctgctctgttattaaaagcat |
149 |
Q |
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| T |
1395133 |
atttttctaaggtagtttgttagtgtatttggtgatctgttatcaaatgcat |
1395184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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