View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0215_low_2 (Length: 368)
Name: NF0215_low_2
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0215_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 29 - 368
Target Start/End: Original strand, 39073515 - 39073854
Alignment:
| Q |
29 |
aagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttat |
128 |
Q |
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| T |
39073515 |
aagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttat |
39073614 |
T |
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| Q |
129 |
gttaagtttttgaagagacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaatgcattaatt |
228 |
Q |
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| T |
39073615 |
gttaagtttttgaagagacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaatgcattaatt |
39073714 |
T |
|
| Q |
229 |
ctacaactcctagtgctttgttattgtccccttcttccggttgtgacgtctggccttttgcaccaaatttactactcacttccacaacagctgccacagt |
328 |
Q |
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| T |
39073715 |
ctacaactcctagtgctttgttattgtccccttcttccggttgtgacgtttggccttttgcaccaaatttactactcacttccacaacagctgccacagt |
39073814 |
T |
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| Q |
329 |
ggacttacccgccggagttcaatttgacgccggaggacat |
368 |
Q |
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| T |
39073815 |
ggacttacccgccggagttcaatttgacgccggaggacat |
39073854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 6259655 - 6259729
Alignment:
| Q |
75 |
cctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagtttttgaagagacaa |
149 |
Q |
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| T |
6259655 |
cctggtggaacaaaaatggacactgcttctatgttagatgaagcaatacattatgtgaagtttttgaagaaacaa |
6259729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 46899335 - 46899443
Alignment:
| Q |
29 |
aagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttat |
128 |
Q |
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|||||||||||| || ||||| || | || || |||||| | || || |||||||||||||||||||| || || ||| | |||||||| |||| |||| |
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| T |
46899335 |
aagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatactgcatcaatgttggatgaagctattcattat |
46899434 |
T |
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| Q |
129 |
gttaagttt |
137 |
Q |
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||||||||| |
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| T |
46899435 |
gttaagttt |
46899443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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