View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0215_low_6 (Length: 281)
Name: NF0215_low_6
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0215_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30434146 - 30433925
Alignment:
| Q |
1 |
tcgattgctcaggttttgacagtgatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttgccacttgatctccgcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30434146 |
tcgattgctcaggttttgacagtgatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttgccaattgatctccgcccaa |
30434047 |
T |
|
| Q |
101 |
agaagaccagggccattcgcaggaggctcaccaagcatcagtcctcattgaagaccgagagagaaaagaaaaaggagacatatttcccaatgaggaaata |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
30434046 |
agaagaccagggccgttcgcaggaggctcaccaagcatcagtcctcattgaagaccgagatggaaaagaaaaaggagacatatttcacaatgaggaaata |
30433947 |
T |
|
| Q |
201 |
tgctatcaagacataggattgt |
222 |
Q |
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|||||||||| ||||||||||| |
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| T |
30433946 |
tgctatcaaggcataggattgt |
30433925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 52227182 - 52227318
Alignment:
| Q |
1 |
tcgattgctcaggttttgacagtgatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttgccacttgatctccgcccaa |
100 |
Q |
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|||||||||||||| |||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
52227182 |
tcgattgctcaggtgttgacagtgatttctcagaagcagaaggctgctttgagggaagtatacaagaacaagaagtatttgccacttgatcttcgcccaa |
52227281 |
T |
|
| Q |
101 |
agaagaccagggccattcgcaggaggctcaccaagca |
137 |
Q |
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| T |
52227282 |
agaagaccagggccattcgcagaaggctcaccaagca |
52227318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 47805654 - 47805767
Alignment:
| Q |
24 |
gatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttgccacttgatctccgcccaaagaagaccagggccattcgcagg |
123 |
Q |
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|||||| ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| |||| |
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| T |
47805654 |
gatttctcagaagcagaaggctgcattgagggaagcttacaagaacaggaagtatttgccacttgatcttcacccaaagaagattagggccatttgcaga |
47805753 |
T |
|
| Q |
124 |
aggctcaccaagca |
137 |
Q |
| |
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|||||||||||||| |
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| T |
47805754 |
aggctcaccaagca |
47805767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 52228358 - 52228434
Alignment:
| Q |
139 |
cagtcctcattgaagaccgagagagaaaagaaaaaggagacatatttcccaatgaggaaatatgctatcaagacata |
215 |
Q |
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||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52228358 |
cagtcttcgttgaagaccgagagggagaagaaaaaggagacatatttcccaatgaggaaatatgctatcaaggcata |
52228434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 19985750 - 19985656
Alignment:
| Q |
43 |
gctgcattgagggaagtttacaagaacaagaagtatttgccacttgatctccgcccaaagaagaccagggccattcgcaggaggctcaccaagca |
137 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | ||||||||| |||| |||||||||||||| |
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| T |
19985750 |
gctgcattgagggaagtttacaagaaaaagaagtatttgccacttgatcttcacccaaagaaaattagggccatttgcagaaggctcaccaagca |
19985656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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