View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0215_low_9 (Length: 239)

Name: NF0215_low_9
Description: NF0215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0215_low_9
NF0215_low_9
[»] scaffold0284 (2 HSPs)
scaffold0284 (97-238)||(2471-2612)
scaffold0284 (15-57)||(2708-2750)
[»] scaffold0114 (2 HSPs)
scaffold0114 (97-238)||(34952-35093)
scaffold0114 (15-68)||(34808-34860)
[»] chr5 (17 HSPs)
chr5 (97-238)||(9023279-9023420)
chr5 (15-98)||(9023124-9023206)
chr5 (108-238)||(27769874-27770004)
chr5 (108-188)||(28903780-28903860)
chr5 (108-188)||(28940175-28940255)
chr5 (101-238)||(11497891-11498028)
chr5 (101-238)||(11505247-11505384)
chr5 (101-238)||(11512641-11512778)
chr5 (101-238)||(11520017-11520154)
chr5 (101-238)||(11527425-11527562)
chr5 (170-223)||(26675123-26675175)
chr5 (170-223)||(26946731-26946783)
chr5 (175-223)||(8206232-8206280)
chr5 (170-217)||(14460086-14460133)
chr5 (101-210)||(11534831-11534940)
chr5 (170-223)||(27001235-27001288)
chr5 (176-228)||(296413-296465)
[»] scaffold0211 (2 HSPs)
scaffold0211 (102-238)||(20088-20224)
scaffold0211 (15-98)||(20301-20383)
[»] chr8 (12 HSPs)
chr8 (97-236)||(36754673-36754812)
chr8 (133-236)||(7680907-7681010)
chr8 (100-235)||(33590138-33590273)
chr8 (132-210)||(41303046-41303123)
chr8 (110-206)||(1249150-1249247)
chr8 (15-98)||(41528704-41528786)
chr8 (165-223)||(21600521-21600579)
chr8 (175-228)||(33508621-33508674)
chr8 (182-238)||(21602122-21602178)
chr8 (15-90)||(36754888-36754962)
chr8 (164-210)||(42659935-42659981)
chr8 (170-239)||(3662419-3662488)
[»] chr4 (26 HSPs)
chr4 (97-238)||(6552448-6552589)
chr4 (97-238)||(312622-312763)
chr4 (108-238)||(38932689-38932819)
chr4 (100-223)||(47097347-47097470)
chr4 (146-238)||(6552897-6552989)
chr4 (108-223)||(48827963-48828078)
chr4 (97-238)||(26499322-26499463)
chr4 (98-238)||(51150944-51151082)
chr4 (108-210)||(7616903-7617005)
chr4 (108-210)||(45615656-45615758)
chr4 (15-98)||(312471-312552)
chr4 (102-238)||(56095124-56095259)
chr4 (16-98)||(6552296-6552376)
chr4 (108-210)||(13834459-13834561)
chr4 (170-223)||(48973337-48973390)
chr4 (156-228)||(38080856-38080928)
chr4 (170-228)||(11839882-11839940)
chr4 (178-238)||(8755906-8755966)
chr4 (175-223)||(17381489-17381537)
chr4 (178-217)||(4161825-4161864)
chr4 (170-217)||(8170895-8170942)
chr4 (164-223)||(31903370-31903429)
chr4 (175-210)||(36409659-36409694)
chr4 (175-210)||(36423825-36423860)
chr4 (175-228)||(9297465-9297518)
chr4 (170-223)||(39331100-39331153)
[»] chr2 (10 HSPs)
chr2 (97-238)||(31967472-31967613)
chr2 (100-238)||(41746430-41746568)
chr2 (108-210)||(17742516-17742617)
chr2 (108-210)||(7165696-7165798)
chr2 (175-238)||(40124368-40124431)
chr2 (108-161)||(9471792-9471845)
chr2 (175-228)||(15301526-15301579)
chr2 (178-223)||(33261030-33261075)
chr2 (170-210)||(12676513-12676553)
chr2 (175-223)||(15816894-15816942)
[»] chr1 (15 HSPs)
chr1 (97-238)||(49880091-49880231)
chr1 (123-235)||(45919857-45919969)
chr1 (100-222)||(9890640-9890758)
chr1 (97-210)||(31738321-31738433)
chr1 (100-223)||(27463771-27463894)
chr1 (108-228)||(40872659-40872776)
chr1 (108-188)||(16658227-16658307)
chr1 (108-210)||(8069009-8069110)
chr1 (108-228)||(52361954-52362074)
chr1 (170-228)||(6541118-6541176)
chr1 (177-217)||(33747858-33747898)
chr1 (170-210)||(34826996-34827036)
chr1 (156-221)||(47921876-47921941)
chr1 (41-98)||(49879921-49879977)
chr1 (175-223)||(38267350-38267398)
[»] chr3 (15 HSPs)
chr3 (97-228)||(50239800-50239931)
chr3 (102-205)||(43838486-43838589)
chr3 (108-238)||(7672391-7672517)
chr3 (15-98)||(50239649-50239731)
chr3 (170-223)||(30843658-30843711)
chr3 (183-221)||(3941666-3941704)
chr3 (175-223)||(26499839-26499887)
chr3 (182-223)||(12832219-12832260)
chr3 (169-218)||(37852904-37852953)
chr3 (133-210)||(41897973-41898049)
chr3 (175-223)||(14194862-14194910)
chr3 (175-223)||(21568420-21568468)
chr3 (170-210)||(23195656-23195696)
chr3 (175-223)||(39336722-39336770)
chr3 (172-228)||(53705888-53705944)
[»] chr6 (8 HSPs)
chr6 (100-233)||(21237203-21237336)
chr6 (110-238)||(26293425-26293553)
chr6 (100-238)||(6524890-6525022)
chr6 (175-238)||(9307403-9307466)
chr6 (170-238)||(16431591-16431659)
chr6 (170-213)||(29927657-29927700)
chr6 (175-228)||(10067660-10067713)
chr6 (170-223)||(31142035-31142088)
[»] chr7 (11 HSPs)
chr7 (135-228)||(5197982-5198075)
chr7 (100-222)||(25689001-25689121)
chr7 (108-222)||(8929505-8929619)
chr7 (175-223)||(5362363-5362411)
chr7 (118-238)||(18942842-18942962)
chr7 (176-223)||(1344462-1344509)
chr7 (175-226)||(3116911-3116962)
chr7 (175-210)||(32996369-32996404)
chr7 (121-223)||(30839838-30839940)
chr7 (175-228)||(39608429-39608482)
chr7 (169-210)||(40077598-40077639)
[»] scaffold0252 (1 HSPs)
scaffold0252 (102-238)||(17193-17327)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-223)||(20654-20699)


Alignment Details
Target: scaffold0284 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 2612 - 2471
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2612 taatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataataatccctgaagtgacaataaataagtatattgaaggac 2513  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  2512 taatatgacaatatcaatgaagtatttgaatgttagggacta 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 2750 - 2708
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgt 57  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  2750 agtaaaaatttcactttgtatgaaatcaggggcggatctatgt 2708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 34952 - 35093
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34952 taatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgataataaataagtatattgaaggac 35051  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  35052 taatatgacaatatcaatgaagtatttgaatgttagggacta 35093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 34808 - 34860
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatg 68  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  34808 agtaaaagtttcactttgtatgaaatcaggggcggatctatgtt-agggctatg 34860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 9023279 - 9023420
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9023279 taatctcacagtgtattacacttctaaaataatccatgattttgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggac 9023378  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  9023379 taatatgacaatatcaatgaagtatttgaatgttagggacta 9023420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 9023124 - 9023206
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  9023124 agtaaaaatttcactttgtatgaaatcaggggcggatctatgtt-agggctatgtggggctttagccccacatgcccttcccta 9023206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 27770004 - 27769874
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||||||||  ||||||||  |||| ||||||||||||||   |||||||||||    
T  27770004 tgtattaaaattctaaaatagtccatgattttgtacttttttagtcataatagtctttgaagtgaaaataagtaagtatattgaagagttaatatgacaa 27769905  T
Q  208 tatcaatgaagtatttgaatgatagggacta 238  Q
    ||| ||| || ||||| |||| ||| |||||    
T  27769904 tattaataaaatattttaatgttagtgacta 27769874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 28903860 - 28903780
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatat 188  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  |||| |||||||||    
T  28903860 tgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttcatgaagtgataataagtaagtatat 28903780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 28940255 - 28940175
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatat 188  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  |||| |||||||||    
T  28940255 tgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttcatgaagtgataataagtaagtatat 28940175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 11497891 - 11498028
Alignment:
Q  101 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 200  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  || |  |||||||||||| |||| |||||||||| || || ||||    
T  11497891 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaacaccccctgaagtgacaataagtaagtatattaaaagattaat 11497990  T
Q  201 atgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||| ||  || ||||| |||| |||||||||    
T  11497991 atgacaatattaacaaattattttaatgttagggacta 11498028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 11505247 - 11505384
Alignment:
Q  101 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 200  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11505247 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11505346  T
Q  201 atgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    | |||||||| ||  || ||||| |||| |||||||||    
T  11505347 acgacaatattaacaaattattttaatgttagggacta 11505384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 11512641 - 11512778
Alignment:
Q  101 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 200  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11512641 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11512740  T
Q  201 atgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    | |||||||| ||  || ||||| |||| |||||||||    
T  11512741 acgacaatattaacaaattattttaatgttagggacta 11512778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 11520017 - 11520154
Alignment:
Q  101 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 200  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11520017 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11520116  T
Q  201 atgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    | |||||||| ||  || ||||| |||| |||||||||    
T  11520117 acgacaatattaacaaattattttaatgttagggacta 11520154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 11527425 - 11527562
Alignment:
Q  101 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 200  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||  |||||||||||| |||| |||||||||| || || ||||    
T  11527425 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccccctgaagtgacaataagtaagtatattaaaagattaat 11527524  T
Q  201 atgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    | |||||||| ||  || ||||| |||| |||||||||    
T  11527525 acgacaatattaacaaattattttaatgttagggacta 11527562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 26675175 - 26675123
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  26675175 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26675123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 26946783 - 26946731
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  26946783 tgacaataaataagtatattgaaggact-atatgacaatattaatgaaatattt 26946731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 8206232 - 8206280
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||||||||||||||| |||||||||||||| |||||| |||||    
T  8206232 ataagtaagtatattgaaggattaatatgacaatattaatgaattattt 8206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 14460086 - 14460133
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaa 217  Q
    |||| |||| ||| ||||||||||||||||||||||||||||| ||||    
T  14460086 tgacaataagtaaatatattgaaggactaatatgacaatatcagtgaa 14460133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 11534831 - 11534940
Alignment:
Q  101 ctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaat 200  Q
    |||||| ||||||||| |  | ||||||||  | |||||| || |||||||||  ||||   ||||||||||| |||| |||||||||| || || ||||    
T  11534831 ctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcgaaataccgcctgaagtgacaataagtaagtatattaaaagattaat 11534930  T
Q  201 atgacaatat 210  Q
    ||||||||||    
T  11534931 atgacaatat 11534940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 27001288 - 27001235
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||| |||||||||||| ||  |||||||||||||| ||||||||||||    
T  27001288 tgacaataagtaagtatattgacggggtaatatgacaatattaatgaagtattt 27001235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 296465 - 296413
Alignment:
Q  176 taaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    ||||||||||||||||||  |||||| |||||||| |||||| ||||| ||||    
T  296465 taaataagtatattgaagatctaatacgacaatattaatgaaatattttaatg 296413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 20224 - 20088
Alignment:
Q  102 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 201  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20224 tctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacaataaataagtatattgaaggactaata 20125  T
Q  202 tgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  20124 tgacaatatcaatgaagtatttgaatgttagagacta 20088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 20383 - 20301
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||||||||| | ||||  |||||||||||||||||||||    
T  20383 agtaaaaatttcactttatatgaaatcaggggcggatctatgtt-agggctatgtggggctcaagccccacatgcccttcccta 20301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 36754812 - 36754673
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  36754812 taatctctcagtgtattaaaattctaaaataattcatgattttgtactttgttagtcataatagtccatgaagtgacaataaataagtatattgaaggac 36754713  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggac 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  36754712 taatatgacaatatcaatgaagtatttgaatgttagggac 36754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 7680907 - 7681010
Alignment:
Q  133 tgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatag 232  Q
    |||||||||||||||||| |||||||||||| |||| |||| |||| |||| ||||||||  ||||| |||||||||| || ||| ||||| |||| |||    
T  7680907 tgattttgtactttgttactcataatagtccttgaaatgacaataagtaaggatattgaaatactaagatgacaatattaacgaattattttaatgttag 7681006  T
Q  233 ggac 236  Q
    ||||    
T  7681007 ggac 7681010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 33590138 - 33590273
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| || ||||||| | |||||||||| |||||||||||||  ||||||  | ||||||| |||| ||| |||||||||| |   |    
T  33590138 tctctcaatgtattaaaattgtaaaatagttcatgattttgcactttgttagtcaatatagtcttttaagtgacaataattaattatattgaagaatcga 33590237  T
Q  200 tatgacaatatcaatgaagtatttgaatgataggga 235  Q
    ||||||||||| || ||||||||| |||| ||||||    
T  33590238 tatgacaatattaacgaagtattttaatgttaggga 33590273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 41303046 - 41303123
Alignment:
Q  132 atgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    ||||||||| ||||||||||||| ||||| ||||| |||||| |||| |||||||||| || |||||||||||||||||    
T  41303046 atgattttgcactttgttagtcaaaatag-ccctggagtgacaataattaagtatattaaaagactaatatgacaatat 41303123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 1249150 - 1249247
Alignment:
Q  110 tattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctg-aagtgacgataaataagtatattgaaggactaatatgaca 206  Q
    ||||||| |||||||||| | ||||||||||  |||||||||||| |||||||| || ||||||| |||| ||| |||||||||| ||| ||||||||    
T  1249150 tattaaaattctaaaatagttcatgattttgctctttgttagtcaaaatagtccttgaaagtgacaataagtaaatatattgaagtactgatatgaca 1249247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 41528786 - 41528704
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    |||||||||||||||| |||||||||||  |||||||||||||| ||| ||||| | ||||  ||||| |||||||||||||||    
T  41528786 agtaaaaatttcactttgtatgaaatcaatggcggatctatgtt-aggactatgtggggctaaagccctacatgcccttcccta 41528704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 21600579 - 21600521
Alignment:
Q  165 tgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||| |||| ||||||||||||||||| ||||||||||||| |||||| |||||    
T  21600579 tgaaatgacaataagtaagtatattgaaggacaaatatgacaatattaatgaaatattt 21600521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 33508621 - 33508674
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||| |||||||||||||||||||||| || ||||| |||||||||||| ||||    
T  33508621 ataagtaagtatattgaaggactaatacgataatattaatgaagtattttaatg 33508674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 21602122 - 21602178
Alignment:
Q  182 agtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||||||||||||||||||||| || ||| ||||| ||||  ||||||||    
T  21602122 agtatattgaaggactaatatgacaatattaacgaattattttaatgtcagggacta 21602178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 36754962 - 36754888
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcc 90  Q
    ||||||||||| |||| ||||||||||| || |||||||||||| ||| ||||| | ||||  |||||||||||||    
T  36754962 agtaaaaattttactttgtatgaaatcaaggacggatctatgtt-aggactatgtggggctaaagccccacatgcc 36754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 42659981 - 42659935
Alignment:
Q  164 ctgaagtgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    |||| ||||| |||| ||||||||||||| |||||||||||||||||    
T  42659981 ctgatgtgacaataagtaagtatattgaatgactaatatgacaatat 42659935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 3662488 - 3662419
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggactaa 239  Q
    |||| |||| |||||||||| ||| |||||||||||||||| ||  || ||||| |||| ||||||||||    
T  3662488 tgacaataagtaagtatattaaagaactaatatgacaatattaacaaattattttaatgctagggactaa 3662419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 6552448 - 6552589
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  6552448 taatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataataggccttgaagtgacaataaataagtatattgaaggac 6552547  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  6552548 taatgtgacaatatcaatgaagtatttgaatgttagggacta 6552589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 312622 - 312763
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  312622 taatctctcagtgtattaaaattataaaataatacatgattttgtactttattagtcataataatccctgaagtgacaataaataagtatattgaaggac 312721  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  312722 taatatgacaatatcaatgaagtatttgaatgttagggacta 312763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 38932689 - 38932819
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  38932689 tgtattaaaattttaaaatagtccatgattttgtacattgttagtcataatagtctctgaagtgacaataaataagtatattgaaggactaatatgacaa 38932788  T
Q  208 tatcaatgaagtatttgaatgatagggacta 238  Q
    ||| |||||| ||||| |||| ||| |||||    
T  38932789 tattaatgaaatattttaatgttagagacta 38932819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 47097347 - 47097470
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| || ||||||||| |||||||||||||||||| |||||||  |||| || || |||| ||||||||||||||| |||||||||    
T  47097347 tctctcaatgtattaaaattttaaaataattcatgattttgtactttgtaagtcatagcagtctctaaactgacaataaataagtatattaaaggactaa 47097446  T
Q  200 tatgacaatatcaatgaagtattt 223  Q
    ||||||||||| ||| ||||||||    
T  47097447 tatgacaatattaataaagtattt 47097470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 6552897 - 6552989
Alignment:
Q  146 tgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||    
T  6552897 tgttagtcataataggccttgaagtgacaataaataagtatattgaaggactaatgagacaatatcaatgaagtatttgaatgttagagacta 6552989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 48827963 - 48828078
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    |||||| || || ||||||| ||| |||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||||  |||||||||||    
T  48827963 tgtatttaaattttaaaatagtccctgattttgtactttattagtcgtaatagtccctgaagtgacaataagtaagtatattgaagggttaatatgacaa 48828062  T
Q  208 tatcaatgaagtattt 223  Q
    ||| ||||| ||||||    
T  48828063 tattaatgacgtattt 48828078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 26499322 - 26499463
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||| | ||||||||| ||||||||||||  |||||||| |||||||||||||| |||||  | |||| |||  || | ||||||||||||| |||    
T  26499322 taatctcttaatgtattaaaattctaaaataataaatgattttatactttgttagtcaaaatagctcatgaaatgataattagtaagtatattgaatgac 26499421  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||||| |||||||||||| |||| || ||||||    
T  26499422 taatatgacaatattaatgaagtattttaatgttacggacta 26499463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 51151082 - 51150944
Alignment:
Q  98 aatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggact 197  Q
    ||||||||| ||||||||| || ||||||| ||  |||||||  ||| |||| |||| |||||||||| ||||||| |||| |||||||||||||| |||    
T  51151082 aatctctcaatgtattaaaattttaaaatagtctctgattttc-actctgttggtcaaaatagtccct-aagtgacaataagtaagtatattgaagtact 51150985  T
Q  198 aatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||||| ||  || ||||| |||| |||||||||    
T  51150984 aatatgacaatattaacaaaatattttaatgttagggacta 51150944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 7617005 - 7616903
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| |   |||||||| ||||||||||||| |||||||| | || |||| |||||||||||||||||| ||||||||||| ||    
T  7617005 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacaataaataagtatattgaatgactaatatgataa 7616906  T
Q  208 tat 210  Q
    |||    
T  7616905 tat 7616903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 45615656 - 45615758
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| ||  |||||||| ||||| ||||||| ||||||   ||||||||| |||| |||||||||||||||||||| |||||||    
T  45615656 tgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagtttttgaagtgacaataagtaagtatattgaaggactaaaatgacaa 45615755  T
Q  208 tat 210  Q
    |||    
T  45615756 tat 45615758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 312471 - 312552
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||  ||||||| | ||||  |||||||||||||||||||||    
T  312471 agtaaaaatttcactttgtatgaaatgaggggtggatctatgtta--ggctatgtggggctaaagccccacatgcccttcccta 312552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 56095259 - 56095124
Alignment:
Q  102 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 201  Q
    ||||| ||||||||| || ||||||  ||  |||||||| ||||||||||||| ||||| |  ||||||||| |||| |||||||||| || ||||||||    
T  56095259 tctcattgtattaaaattttaaaattgtctctgattttgcactttgttagtcaaaataggct-tgaagtgacaataagtaagtatattaaaagactaata 56095161  T
Q  202 tgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||| ||  || ||||| |||| |||||||||    
T  56095160 tgacaatattaacaaattattttaatgttagggacta 56095124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 6552296 - 6552376
Alignment:
Q  16 gtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    ||||||||||||||| |||||||| || |||||||||||||||| ||||| || | ||||  |||||||||||||||||||||    
T  6552296 gtaaaaatttcactttgtatgaaa-catgggcggatctatgtta-gggctttgtggggctaaagccccacatgcccttcccta 6552376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 13834561 - 13834459
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| ||  |||||||  ||||  ||||||| ||||||   | ||||||| |||| ||||||||||||||||||||||||||||    
T  13834561 tgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaatagtttttaaagtgacaataagtaagtatattgaaggactaatatgacaa 13834462  T
Q  208 tat 210  Q
    |||    
T  13834461 tat 13834459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 48973337 - 48973390
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  48973337 tgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcattt 48973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 38080856 - 38080928
Alignment:
Q  156 aatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||| |||| ||  |||||||| ||||    
T  38080856 aatagtctcggaagtgacaataaataagtatattgaagtactaatatgactatattaacaaagtattttaatg 38080928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 11839940 - 11839882
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||| |||| ||||| ||||||||||||||||||||||||| || ||||||||| ||||    
T  11839940 tgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatg 11839882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 8755906 - 8755966
Alignment:
Q  178 aataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||| ||||| |||||||||||||| || ||||||||| |||| ||| |||||    
T  8755906 aataagtatattaaaggattaatatgacaatattaacgaagtattttaatgttagagacta 8755966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 17381489 - 17381537
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| ||||||||||||||||||||||||||||||| || ||| |||||    
T  17381489 ataagtaagtatattgaaggactaatatgacaatattaacgaaatattt 17381537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 4161825 - 4161864
Alignment:
Q  178 aataagtatattgaaggactaatatgacaatatcaatgaa 217  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  4161825 aataagtatattgaagaactaatatgacaatattaatgaa 4161864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 8170895 - 8170942
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaa 217  Q
    |||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  8170895 tgacaataagtaagtatattgaagtactaatatgacaatattaatgaa 8170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 31903429 - 31903370
Alignment:
Q  164 ctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    ||||| |||| |||| |||||||||||||||||| |||||||||||  |||||| |||||    
T  31903429 ctgaaatgacaataagtaagtatattgaaggactgatatgacaatactaatgaattattt 31903370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 36409659 - 36409694
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatat 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  36409659 ataagtaagtatattgaaggactaatatgacaatat 36409694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 36423825 - 36423860
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatat 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  36423825 ataagtaagtatattgaaggactaatatgacaatat 36423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 9297518 - 9297465
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    ||||||||||||||| || ||||||||||||||||| ||  |||||||| ||||    
T  9297518 ataaataagtatatttaatgactaatatgacaatattaacaaagtattttaatg 9297465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 39331100 - 39331153
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||||||||||||||||| |||| |||| ||||||| ||||||| ||||    
T  39331100 tgacaataaataagtatattgaaagactgatataacaatattaatgaagcattt 39331153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 31967613 - 31967472
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||    
T  31967613 taatctctcagtgtattaaaattctaaaagaatccatgattttgtactttgttagtcataatagtctctgaagtgacagtaaaaaagtatattgaaggac 31967514  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  31967513 taatatgacaatatcaatgaagtatttgaatgttagggacta 31967472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 41746568 - 41746430
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| |||||| || |||||||||| | |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  41746568 tctctcaatgtatttaaattctaaaatagttcatgattttgtacttttttagacataatagtccctgaagtgacaataaataagtatattgaagggctaa 41746469  T
Q  200 tatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||| |||||||||||| |||| ||| |||||    
T  41746468 tatgacaatattaatgaagtattttaatgttagagacta 41746430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 17742516 - 17742617
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| ||  |||||||| ||||||||||| | ||||| |||||||||||| |||| |||||||||| || ||||||||||||||    
T  17742516 tgtattaaaattttaaaatagtctctgattttgcactttgttagttaaaatag-ccctgaagtgacaataagtaagtatattaaaagactaatatgacaa 17742614  T
Q  208 tat 210  Q
    |||    
T  17742615 tat 17742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 7165798 - 7165696
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| ||  |||||||| ||||| ||||| | |||||||  ||||||||| |||| ||||||||||||| ||||||||||| ||    
T  7165798 tgtattaaaattttaaaatagtctctgattttgcactttattagttaaaatagtctttgaagtgacaataagtaagtatattgaaagactaatatgaaaa 7165699  T
Q  208 tat 210  Q
    |||    
T  7165698 tat 7165696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 40124431 - 40124368
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||| || |||| || ||||||    
T  40124431 ataagtaagtatattgaagggctaatatgacaatattaatgaagtactttaatgttatggacta 40124368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 9471845 - 9471792
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagt 161  Q
    ||||||||| |||||||||| ||  || ||||||||||||||||||||||||||    
T  9471845 tgtattaaaattctaaaatagtcattgtttttgtactttgttagtcataatagt 9471792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 15301526 - 15301579
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||| |||||||||||||| ||||||| |||||||| || ||||||||| ||||    
T  15301526 ataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatg 15301579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 33261075 - 33261030
Alignment:
Q  178 aataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||||||||||||||| | ||||||||||||||||| ||| |||||    
T  33261075 aataagtatattgaagaaataatatgacaatatcaacgaaatattt 33261030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 12676553 - 12676513
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    |||| ||| ||||||||||||| ||||||||||||||||||    
T  12676553 tgacaatagataagtatattgagggactaatatgacaatat 12676513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 15816942 - 15816894
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| ||||||| ||||||||||||||||||||||| ||  ||||||||    
T  15816942 ataagtaagtatcttgaaggactaatatgacaatattaacaaagtattt 15816894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 49880091 - 49880231
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||    
T  49880091 taatctctcagtgtattaaa-ttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacaataagtaagtatattgaaagac 49880189  T
Q  197 taatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  49880190 taatatgacaatatcaatgaagtattttaatgttagggacta 49880231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 45919969 - 45919857
Alignment:
Q  123 aaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatt 222  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||   |||||||||||||||||||||||||    
T  45919969 aaataattcatgattttgtactttgttagtcataatagtccctaaagtgacaataagtaagtatattgaagggtcaatatgacaatatcaatgaagtatt 45919870  T
Q  223 tgaatgataggga 235  Q
    | |||| ||||||    
T  45919869 ttaatgttaggga 45919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 9890758 - 9890640
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| ||||||||||   |||||||||| ||||||||||||| |||||||||| || ||||    ||||||||||||||||||||||    
T  9890758 tctctcaatgtattaaaattctaaaatagatcatgattttgcactttgttagtcaaaatagtcccttaaatgac----aataagtatattgaaggactaa 9890663  T
Q  200 tatgacaatatcaatgaagtatt 222  Q
    ||||||||||| || ||||||||    
T  9890662 tatgacaatattaacgaagtatt 9890640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 31738433 - 31738321
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||| | || |||||||||   |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| || ||     
T  31738433 taatctctcaatgtattagaattttaaaataatttttgattttgtactttgttagtcaaaatagt-cctgaagtgacaataaataagtatattaaatgat 31738335  T
Q  197 taatatgacaatat 210  Q
    ||||||||||||||    
T  31738334 taatatgacaatat 31738321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 27463771 - 27463894
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| |||||||||| ||  | |||||| ||||||||||||| |||||||  |||| |||| |||| ||||||||||||| ||||||    
T  27463771 tctctcaatgtattaaaattctaaaatagtctctaattttgcactttgttagtcaaaatagtctttgaaatgacaataagtaagtatattgaaagactaa 27463870  T
Q  200 tatgacaatatcaatgaagtattt 223  Q
    ||| ||||||| ||  ||||||||    
T  27463871 tataacaatattaacaaagtattt 27463894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 40872776 - 40872659
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||| ||| ||| ||||||||||||||||||||||||   |||| ||||||||| |||| ||||||||||  ||| ||||||||||||    
T  40872776 tgtattaaaattttaatatagtccctgattttgtactttgttagtcata---gtccttgaagtgacaataagtaagtatattatagggctaatatgacaa 40872680  T
Q  208 tatcaatgaagtatttgaatg 228  Q
    ||| ||| |||||||| ||||    
T  40872679 tattaattaagtattttaatg 40872659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 16658307 - 16658227
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatat 188  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||  |||| |||||||||    
T  16658307 tgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagttcatgaagtgataataagtaagtatat 16658227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 8069009 - 8069110
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| |||||||||| | |||||||||| ||||||||||||| || ||| ||| || |||  |||| |||||||||||| ||| |||||||||||    
T  8069009 tgtattaaaattctaaaatagttcatgattttgcactttgttagtca-aaaagttccttaaatgataataagtaagtatattgatggattaatatgacaa 8069107  T
Q  208 tat 210  Q
    |||    
T  8069108 tat 8069110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 52361954 - 52362074
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| ||  |||||||| ||||| ||| ||| |||| ||  ||||||||  |||||||||||||| |||| |||||||||| ||    
T  52361954 tgtattaaaattttaaaatagtctctgattttgcactttattattcaaaataatcaatgaagtgataataaataagtatatcgaagaactaatatgataa 52362053  T
Q  208 tatcaatgaagtatttgaatg 228  Q
    ||| ||  |||||||| ||||    
T  52362054 tattaacaaagtattttaatg 52362074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 6541176 - 6541118
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||| |||| ||||||||||||||||||||||||||||||| || ||| ||||| ||||    
T  6541176 tgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatg 6541118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 33747858 - 33747898
Alignment:
Q  177 aaataagtatattgaaggactaatatgacaatatcaatgaa 217  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  33747858 aaataagtatattgaaggattaatatgacaatattaatgaa 33747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 34826996 - 34827036
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  34826996 tgacaataaataagtatattgaatgactaatatgacaatat 34827036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 47921876 - 47921941
Alignment:
Q  156 aatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtat 221  Q
    |||||||| |||| |||| |||| |||||||||||||||  |||||||| || || ||||||||||    
T  47921876 aatagtccatgaactgacaataagtaagtatattgaagggttaatatgataagattaatgaagtat 47921941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 49879921 - 49879977
Alignment:
Q  41 caggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    |||||||||||||||||| ||||||||| | ||||  |||||||||||| ||||||||    
T  49879921 caggggcggatctatgtt-agggctatgtggggctaaagccccacatgctcttcccta 49879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 38267350 - 38267398
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| ||| |||||||||||| |||||||||||||| ||||||| ||||    
T  38267350 ataagtaaatatattgaaggattaatatgacaatattaatgaagcattt 38267398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 50239800 - 50239931
Alignment:
Q  97 taatctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggac 196  Q
    |||||||||| ||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  50239800 taatctctcagtgtattaaaattctaaaataatccatgtttatgtactttgttagttataatagtccctgaagtgacaataaataagtatattgaaggac 50239899  T
Q  197 taatatgacaatatcaatgaagtatttgaatg 228  Q
    |||||||||||||||||| |||||||||||||    
T  50239900 taatatgacaatatcaattaagtatttgaatg 50239931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 43838486 - 43838589
Alignment:
Q  102 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 201  Q
    ||||| ||||||||| || ||||||| ||  ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||    
T  43838486 tctcaatgtattaaaattttaaaatagtctttgattttgtactttgttagtcataatagtccatgaagtgacaataagtaagtatattgaagggctaata 43838585  T
Q  202 tgac 205  Q
    ||||    
T  43838586 tgac 43838589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 7672391 - 7672517
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||| | ||||||||||||  |||| ||||| |    
T  7672391 tgtattaaaattctaaaataattcatgattttgtactttgttagtcataatagt-catgaagtgacaataagt-agtatattgaagagctaa-atgac-a 7672486  T
Q  208 tatcaatgaagtatttgaatgatagggacta 238  Q
    |||  ||||||||||| |||| ||| |||||    
T  7672487 tattgatgaagtattttaatgttagagacta 7672517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 50239649 - 50239731
Alignment:
Q  15 agtaaaaatttcacttagtatgaaatcaggggcggatctatgttaagggctatgcgaggctttagccccacatgcccttcccta 98  Q
    |||||||||||||||| |||||||||||| || |||| |||||| ||||||||| ||||||  |||||||||||||||||||||    
T  50239649 agtaaaaatttcactttgtatgaaatcagcggtggatatatgtt-agggctatgtgaggctaaagccccacatgcccttcccta 50239731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30843711 - 30843658
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  30843711 tgacaataaataagtatattgaaagactaatatgacaatattaatgaagcattt 30843658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 3941704 - 3941666
Alignment:
Q  183 gtatattgaaggactaatatgacaatatcaatgaagtat 221  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  3941704 gtatattgaaggactaatatgacaatattaatgaagtat 3941666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 26499887 - 26499839
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||    
T  26499887 ataaataagtatattgaatgactgatatgaaaatattaatgaagtattt 26499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 12832219 - 12832260
Alignment:
Q  182 agtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  12832219 agtatattgaaggacttatatgacaatattaatgaagcattt 12832260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 37852953 - 37852904
Alignment:
Q  169 gtgacgataaataagtatattgaaggactaatatgacaatatcaatgaag 218  Q
    ||||| ||||||||||||||| || ||||||||||||| ||| |||||||    
T  37852953 gtgacaataaataagtatattaaaagactaatatgacattattaatgaag 37852904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 41898049 - 41897973
Alignment:
Q  133 tgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    |||||||| ||||||||| ||| ||||| | || ||||||| | |||||| |||||| || |||||||||||||||||    
T  41898049 tgattttgcactttgttaatcaaaatag-ctctaaagtgacaacaaataaatatattaaaagactaatatgacaatat 41897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 14194862 - 14194910
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||||||||| || |||| |||||||||||| ||||||||||||    
T  14194862 ataactaagtatattaaatgactgatatgacaatattaatgaagtattt 14194910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 21568468 - 21568420
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||| ||||    
T  21568468 ataagtaagtatattgaaggacaaatatgagaatattaatgaagcattt 21568420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 23195656 - 23195696
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  23195656 tgacaataattaagtatattgaaagactaatatgacaatat 23195696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 39336722 - 39336770
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||||||||||||||| ||||||| |||||| ||||||| ||||    
T  39336722 ataagtaagtatattgaaggattaatatgtcaatataaatgaagcattt 39336770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 53705888 - 53705944
Alignment:
Q  172 acgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    ||||||| |||||||||||||  |||||||||||||||| ||  |||||||| ||||    
T  53705888 acgataagtaagtatattgaataactaatatgacaatattaacaaagtattttaatg 53705944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 21237203 - 21237336
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| |||||||||| ||| ||| |||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||| | ||||    
T  21237203 tctctcaatgtattaaaattctaaaatagtccctgagtttgtactttattagtcataatagtccctggagtgacaataactaagtatattgaacggctaa 21237302  T
Q  200 tatgacaatatcaatgaagtatttgaatgatagg 233  Q
    ||||||||| | |||||||||||| |||| ||||    
T  21237303 tatgacaatgttaatgaagtattttaatgttagg 21237336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 26293425 - 26293553
Alignment:
Q  110 tattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaata 209  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||    | ||||||| |||| || |||||||||| ||||||||||| ||||    
T  26293425 tattaaaattctaaaatagtccatgattttgtactttgttagtcaaaatagcatttaaagtgacaataagtatgtatattgaatgactaatatgataata 26293524  T
Q  210 tcaatgaagtatttgaatgatagggacta 238  Q
    | ||  |||||||| |||| || ||||||    
T  26293525 ttaacaaagtattttaatgttaaggacta 26293553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 6524890 - 6525022
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| |||||||||| ||| ||||||||||||||||| ||     |||||  | ||||||  |||| ||| ||||||||||||||||    
T  6524890 tctctcaatgtattaaaattctaaaatagtccctgattttgtactttgtttgt-----tagtca-taaagtgagaataagtaaatatattgaaggactaa 6524983  T
Q  200 tatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||||| |||||||||||| |||| || ||||||    
T  6524984 tatgacaatattaatgaagtattttaatgttacggacta 6525022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 9307403 - 9307466
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||| ||||||||||||||||||||||||||||| | |||||| ||||| ||||  ||||||||    
T  9307403 ataagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggacta 9307466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 16431591 - 16431659
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    |||| |||| ||||||||||||| ||||||||||||||||| | |||| ||||| |||| ||| |||||    
T  16431591 tgacaataagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgttagagacta 16431659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 29927657 - 29927700
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaa 213  Q
    |||| |||||||||| |||||||| |||||||||||||||||||    
T  29927657 tgacaataaataagtttattgaagaactaatatgacaatatcaa 29927700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 10067660 - 10067713
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||| ||||||||||||| ||||||||||||||||| ||  |||||||| ||||    
T  10067660 ataagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatg 10067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 31142088 - 31142035
Alignment:
Q  170 tgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||| |||| ||| |||||||||| ||| |||||||||||| ||||||||||||    
T  31142088 tgacaataagtaaatatattgaagtactgatatgacaatattaatgaagtattt 31142035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 5197982 - 5198075
Alignment:
Q  135 attttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||||| ||||||||||||| ||||||||||||||  || |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  5197982 attttgcactttgttagtcaaaatagtccctgaagcaacaataaataagtatattgaaagactaatatgacaatattaatgaagtattttaatg 5198075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 25689001 - 25689121
Alignment:
Q  100 tctctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaa 199  Q
    ||||||| ||||||||| ||||||||||||   |||||||| ||||||||||| | |||||||||| || |||  |||| |||||||||| || |  |||    
T  25689001 tctctcaatgtattaaaattctaaaataatttctgattttgcactttgttagttaaaatagtcccttaaatgataataagtaagtatatttaatg--taa 25689098  T
Q  200 tatgacaatatcaatgaagtatt 222  Q
    ||||||||||| || ||||||||    
T  25689099 tatgacaatattaacgaagtatt 25689121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 8929505 - 8929619
Alignment:
Q  108 tgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaa 207  Q
    ||||||||| || ||||||| |   |||||||| ||||||||||||| |||||||| | || ||||  |||||||||||| |||| ||||||| ||| ||    
T  8929505 tgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatgacagtaaataagtatactgaatgactaatttgataa 8929604  T
Q  208 tatcaatgaagtatt 222  Q
    ||| || ||||||||    
T  8929605 tattaacgaagtatt 8929619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 5362411 - 5362363
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||    
T  5362411 ataaataagtatattgaaggactaatatgaccatattaacgaagtattt 5362363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 18942962 - 18942842
Alignment:
Q  118 ttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaa 217  Q
    |||||||||| ||  |||||||| | ||| ||| ||| |||| ||| |||| |||| |||| ||||||||||||| || |||||||||||||| || ||     
T  18942962 ttctaaaatagtctctgattttgcattttattaatcaaaataatccatgaaatgacaataagtaagtatattgaatgattaatatgacaatattaacgac 18942863  T
Q  218 gtatttgaatgatagggacta 238  Q
    |||||| |||| ||| |||||    
T  18942862 gtattttaatgttagagacta 18942842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 1344509 - 1344462
Alignment:
Q  176 taaataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||    
T  1344509 taaataagtatattgaaggactgatgtgacaatattaatgaagtattt 1344462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 3116962 - 3116911
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaa 226  Q
    |||| ||||||||||||| ||||||||||||||||| |||||| ||||||||    
T  3116962 ataagtaagtatattgaaagactaatatgacaatattaatgaaatatttgaa 3116911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 32996404 - 32996369
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatat 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  32996404 ataaataagtatattgaaggactaatatgacaatat 32996369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 30839940 - 30839838
Alignment:
Q  121 taaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaatatgacaatatcaatgaagta 220  Q
    ||||||| ||| |||||||  | ||| ||||| | ||||||| || || |||  ||||||||||||| |||||||||||||||||||| | || ||||||    
T  30839940 taaaatagtccctgattttaaattttattagttaaaatagtctctaaaatgataataaataagtatactgaaggactaatatgacaatgttaacgaagta 30839841  T
Q  221 ttt 223  Q
    |||    
T  30839840 ttt 30839838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 39608482 - 39608429
Alignment:
Q  175 ataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatg 228  Q
    |||| |||||||| |||| ||||||||||||||||| ||| |||||||| ||||    
T  39608482 ataagtaagtatactgaatgactaatatgacaatattaatcaagtattttaatg 39608429  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 40077598 - 40077639
Alignment:
Q  169 gtgacgataaataagtatattgaaggactaatatgacaatat 210  Q
    |||||||||||||| |||||||||| |||||||| |||||||    
T  40077598 gtgacgataaataaatatattgaagtactaatataacaatat 40077639  T

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Target: scaffold0252 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 17327 - 17193
Alignment:
Q  102 tctcactgtattaaacttctaaaataatccatgattttgtactttgttagtcataatagtccctgaagtgacgataaataagtatattgaaggactaata 201  Q
    ||||| ||||||||| ||||||||||  || |||||||||||  |  |||||| ||| ||||||| |||||| ||||||||||||||||||  |||| ||    
T  17327 tctcaatgtattaaaattctaaaataggccctgattttgtaccat--tagtcaaaatggtccctgtagtgacaataaataagtatattgaaatactagta 17230  T
Q  202 tgacaatatcaatgaagtatttgaatgatagggacta 238  Q
    ||||||||| || ||||||||| |||| || ||||||    
T  17229 tgacaatattaacgaagtattttaatgttatggacta 17193  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 20699 - 20654
Alignment:
Q  178 aataagtatattgaaggactaatatgacaatatcaatgaagtattt 223  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||    
T  20699 aataagtctattgaaggactaatatgacaatattaatgaaatattt 20654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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