View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0216-INSERTION-1 (Length: 319)

Name: NF0216-INSERTION-1
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0216-INSERTION-1
NF0216-INSERTION-1
[»] chr2 (10 HSPs)
chr2 (8-288)||(995137-995427)
chr2 (288-318)||(2249579-2249609)
chr2 (289-318)||(1021200-1021229)
chr2 (289-318)||(1115168-1115197)
chr2 (289-318)||(6750136-6750165)
chr2 (289-318)||(22674870-22674899)
chr2 (289-318)||(28745624-28745653)
chr2 (289-318)||(36436312-36436341)
chr2 (289-318)||(38527173-38527202)
chr2 (290-318)||(12994975-12995003)
[»] chr7 (5 HSPs)
chr7 (287-318)||(44724193-44724224)
chr7 (289-318)||(19692467-19692496)
chr7 (289-318)||(26873702-26873731)
chr7 (289-318)||(36358440-36358469)
chr7 (289-318)||(36675617-36675646)
[»] chr1 (8 HSPs)
chr1 (288-319)||(48708546-48708577)
chr1 (288-318)||(16693078-16693108)
chr1 (288-318)||(29169940-29169970)
chr1 (289-318)||(6849752-6849781)
chr1 (289-318)||(8530082-8530111)
chr1 (289-318)||(17285423-17285452)
chr1 (289-318)||(29981836-29981865)
chr1 (289-318)||(45836854-45836883)
[»] chr5 (7 HSPs)
chr5 (288-318)||(3631257-3631287)
chr5 (289-318)||(8074369-8074398)
chr5 (289-318)||(9737836-9737865)
chr5 (289-318)||(13013384-13013413)
chr5 (289-318)||(25701550-25701579)
chr5 (289-318)||(26525359-26525388)
chr5 (289-318)||(41084709-41084738)
[»] chr4 (11 HSPs)
chr4 (288-318)||(18491185-18491215)
chr4 (288-318)||(36584422-36584452)
chr4 (288-318)||(40228561-40228591)
chr4 (289-318)||(6755828-6755857)
chr4 (289-318)||(11651096-11651125)
chr4 (289-318)||(19653774-19653803)
chr4 (289-318)||(27270353-27270382)
chr4 (289-318)||(36955140-36955169)
chr4 (289-318)||(44134493-44134522)
chr4 (289-318)||(44817679-44817708)
chr4 (289-318)||(51001475-51001504)
[»] chr3 (7 HSPs)
chr3 (288-318)||(18163716-18163746)
chr3 (288-318)||(28952522-28952552)
chr3 (289-318)||(29126174-29126203)
chr3 (289-318)||(36633486-36633515)
chr3 (289-318)||(50527764-50527793)
chr3 (289-318)||(52201981-52202010)
chr3 (289-318)||(52571555-52571584)
[»] scaffold0131 (1 HSPs)
scaffold0131 (289-318)||(11166-11195)
[»] scaffold0014 (1 HSPs)
scaffold0014 (289-318)||(64933-64962)
[»] chr8 (7 HSPs)
chr8 (288-317)||(3886912-3886941)
chr8 (289-318)||(7012337-7012366)
chr8 (289-318)||(9830607-9830636)
chr8 (289-318)||(24797184-24797213)
chr8 (289-318)||(34934386-34934415)
chr8 (289-318)||(41838085-41838114)
chr8 (290-318)||(1183823-1183851)
[»] chr6 (1 HSPs)
chr6 (289-318)||(12698493-12698522)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 995427 - 995137
Alignment:
Q  8 ctttatattctccacattctcattccggcacatctcgacaacaattctcacgcaccatgcatatatcaccagcatagcatgtttggatttgtataaatca 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  995427 ctttatattctccacattctcattccagcacatctcgacaacaactctcacgcaccatgcatatatcaccagcatagcatgtttggatttgtataaatca 995328  T
Q  108 atccagtacagtctaaacacataatgtgcaccataatattcaac------ctacagcaccgtacaaactaaagcaatccaaaaccagtttctcgttacag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  995327 atccagtacagtctaaacacataatgtgcaccataatattcaacatactgctacagcaccgtacaaactaaagcaatccaaaaccagtttctcgttacag 995228  T
Q  202 tcatatacaatctaaaaccaatcatatatatgaaactataatacatccaaatattgc----tatctcaccaacaccgcgcgcccgcgcctg 288  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||| ||||||||||||    
T  995227 tcatatacaatccaaaaccaatcatatatatgaaactgtaatacatccaaatattgctatatatctcaccaacaccgcacgcccgcgcctg 995137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 2249579 - 2249609
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  2249579 gcagtggcggagcccttcatgggctggggtg 2249609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 1021229 - 1021200
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  1021229 cagtggcggagcccttcatgggctggggtg 1021200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 1115197 - 1115168
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  1115197 cagtggcggagcccttcatgggctggggtg 1115168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 6750165 - 6750136
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  6750165 cagtggcggagcccttcatgggctggggtg 6750136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 22674899 - 22674870
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  22674899 cagtggcggagcccttcatgggctggggtg 22674870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 28745653 - 28745624
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  28745653 cagtggcggagcccttcatgggctggggtg 28745624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 36436341 - 36436312
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  36436341 cagtggcggagcccttcatgggctggggtg 36436312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 38527173 - 38527202
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  38527173 cagtggcggagcccttcatgggctggggtg 38527202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 12994975 - 12995003
Alignment:
Q  290 agtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||    
T  12994975 agtggcggagcccttcatgggctggggtg 12995003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 44724224 - 44724193
Alignment:
Q  287 tgcagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||||    
T  44724224 tgcagtggcggagcccttcatgggctggggtg 44724193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 19692467 - 19692496
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  19692467 cagtggcggagcccttcatgggctggggtg 19692496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 26873702 - 26873731
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  26873702 cagtggcggagcccttcatgggctggggtg 26873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 36358469 - 36358440
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  36358469 cagtggcggagcccttcatgggctggggtg 36358440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 36675646 - 36675617
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  36675646 cagtggcggagcccttcatgggctggggtg 36675617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 319
Target Start/End: Complemental strand, 48708577 - 48708546
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtga 319  Q
    ||||||||||||||||||||||||||||||||    
T  48708577 gcagtggcggagcccttcatgggctggggtga 48708546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Complemental strand, 16693108 - 16693078
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  16693108 gcagtggcggagcccttcatgggctggggtg 16693078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 29169940 - 29169970
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  29169940 gcagtggcggagcccttcatgggctggggtg 29169970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 6849752 - 6849781
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  6849752 cagtggcggagcccttcatgggctggggtg 6849781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 8530082 - 8530111
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  8530082 cagtggcggagcccttcatgggctggggtg 8530111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 17285452 - 17285423
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  17285452 cagtggcggagcccttcatgggctggggtg 17285423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 29981865 - 29981836
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  29981865 cagtggcggagcccttcatgggctggggtg 29981836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 45836854 - 45836883
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  45836854 cagtggcggagcccttcatgggctggggtg 45836883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 3631257 - 3631287
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  3631257 gcagtggcggagcccttcatgggctggggtg 3631287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 8074398 - 8074369
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  8074398 cagtggcggagcccttcatgggctggggtg 8074369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 9737865 - 9737836
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  9737865 cagtggcggagcccttcatgggctggggtg 9737836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 13013413 - 13013384
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  13013413 cagtggcggagcccttcatgggctggggtg 13013384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 25701579 - 25701550
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  25701579 cagtggcggagcccttcatgggctggggtg 25701550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 26525388 - 26525359
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  26525388 cagtggcggagcccttcatgggctggggtg 26525359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 41084738 - 41084709
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  41084738 cagtggcggagcccttcatgggctggggtg 41084709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 18491185 - 18491215
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  18491185 gcagtggcggagcccttcatgggctggggtg 18491215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 36584422 - 36584452
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  36584422 gcagtggcggagcccttcatgggctggggtg 36584452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Complemental strand, 40228591 - 40228561
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  40228591 gcagtggcggagcccttcatgggctggggtg 40228561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 6755828 - 6755857
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  6755828 cagtggcggagcccttcatgggctggggtg 6755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 11651125 - 11651096
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  11651125 cagtggcggagcccttcatgggctggggtg 11651096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 19653803 - 19653774
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  19653803 cagtggcggagcccttcatgggctggggtg 19653774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 27270353 - 27270382
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  27270353 cagtggcggagcccttcatgggctggggtg 27270382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 36955169 - 36955140
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  36955169 cagtggcggagcccttcatgggctggggtg 36955140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 44134493 - 44134522
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  44134493 cagtggcggagcccttcatgggctggggtg 44134522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 44817708 - 44817679
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  44817708 cagtggcggagcccttcatgggctggggtg 44817679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 51001475 - 51001504
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  51001475 cagtggcggagcccttcatgggctggggtg 51001504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 18163716 - 18163746
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  18163716 gcagtggcggagcccttcatgggctggggtg 18163746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Complemental strand, 28952552 - 28952522
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||||    
T  28952552 gcagtggcggagcccttcatgggctggggtg 28952522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 29126203 - 29126174
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  29126203 cagtggcggagcccttcatgggctggggtg 29126174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 36633486 - 36633515
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  36633486 cagtggcggagcccttcatgggctggggtg 36633515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 50527793 - 50527764
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  50527793 cagtggcggagcccttcatgggctggggtg 50527764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 52201981 - 52202010
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  52201981 cagtggcggagcccttcatgggctggggtg 52202010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 52571584 - 52571555
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  52571584 cagtggcggagcccttcatgggctggggtg 52571555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 11166 - 11195
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  11166 cagtggcggagcccttcatgggctggggtg 11195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 64933 - 64962
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  64933 cagtggcggagcccttcatgggctggggtg 64962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Complemental strand, 3886941 - 3886912
Alignment:
Q  288 gcagtggcggagcccttcatgggctggggt 317  Q
    ||||||||||||||||||||||||||||||    
T  3886941 gcagtggcggagcccttcatgggctggggt 3886912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 7012337 - 7012366
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  7012337 cagtggcggagcccttcatgggctggggtg 7012366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 9830607 - 9830636
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  9830607 cagtggcggagcccttcatgggctggggtg 9830636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 24797213 - 24797184
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  24797213 cagtggcggagcccttcatgggctggggtg 24797184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 34934415 - 34934386
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  34934415 cagtggcggagcccttcatgggctggggtg 34934386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 41838114 - 41838085
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  41838114 cagtggcggagcccttcatgggctggggtg 41838085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 1183823 - 1183851
Alignment:
Q  290 agtggcggagcccttcatgggctggggtg 318  Q
    |||||||||||||||||||||||||||||    
T  1183823 agtggcggagcccttcatgggctggggtg 1183851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 12698493 - 12698522
Alignment:
Q  289 cagtggcggagcccttcatgggctggggtg 318  Q
    ||||||||||||||||||||||||||||||    
T  12698493 cagtggcggagcccttcatgggctggggtg 12698522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1050 times since January 2019
Visitors: 2388