View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0216-INSERTION-2 (Length: 656)

Name: NF0216-INSERTION-2
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0216-INSERTION-2
NF0216-INSERTION-2
[»] chr6 (5 HSPs)
chr6 (14-656)||(28138174-28138817)
chr6 (360-431)||(6982835-6982906)
chr6 (362-425)||(10501975-10502038)
chr6 (612-655)||(12466438-12466481)
chr6 (509-589)||(30587503-30587579)
[»] chr4 (7 HSPs)
chr4 (120-295)||(2048742-2048920)
chr4 (361-435)||(39735815-39735889)
chr4 (341-426)||(2048966-2049051)
chr4 (360-429)||(3958945-3959014)
chr4 (613-656)||(27292985-27293028)
chr4 (619-656)||(4919059-4919096)
chr4 (612-656)||(42976369-42976413)
[»] chr2 (11 HSPs)
chr2 (189-300)||(18559840-18559952)
chr2 (366-431)||(21949895-21949960)
chr2 (219-261)||(21950067-21950109)
chr2 (382-435)||(41411516-41411569)
chr2 (613-656)||(14096295-14096338)
chr2 (613-656)||(18977221-18977264)
chr2 (382-429)||(40275158-40275205)
chr2 (366-435)||(9446973-9447042)
chr2 (360-433)||(14555887-14555960)
chr2 (341-417)||(18559723-18559799)
chr2 (360-432)||(38346691-38346763)
[»] chr8 (5 HSPs)
chr8 (120-300)||(40715703-40715887)
chr8 (341-431)||(6596498-6596588)
chr8 (222-295)||(6596378-6596452)
chr8 (360-429)||(19168178-19168247)
chr8 (341-426)||(40715928-40716013)
[»] chr5 (5 HSPs)
chr5 (344-431)||(33417416-33417503)
chr5 (98-294)||(33417157-33417366)
chr5 (613-656)||(30624903-30624946)
chr5 (366-435)||(31610042-31610111)
chr5 (341-380)||(15867381-15867420)
[»] chr7 (8 HSPs)
chr7 (120-295)||(38835898-38836075)
chr7 (341-431)||(8308208-8308298)
chr7 (341-426)||(38836121-38836206)
chr7 (360-431)||(49094543-49094614)
chr7 (360-432)||(30559359-30559431)
chr7 (613-656)||(19436711-19436754)
chr7 (362-425)||(25862613-25862676)
chr7 (613-656)||(29834080-29834123)
[»] chr3 (3 HSPs)
chr3 (494-608)||(4292984-4293095)
chr3 (613-656)||(50650527-50650570)
chr3 (360-404)||(11536252-11536296)
[»] scaffold0098 (1 HSPs)
scaffold0098 (213-261)||(21800-21848)
[»] chr1 (7 HSPs)
chr1 (362-435)||(42080685-42080758)
chr1 (213-299)||(17937621-17937709)
chr1 (613-656)||(27286203-27286246)
chr1 (213-261)||(17867361-17867409)
chr1 (382-429)||(43403894-43403941)
chr1 (613-652)||(52385953-52385992)
chr1 (132-188)||(17937528-17937584)
[»] scaffold0141 (1 HSPs)
scaffold0141 (363-429)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (360-429)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 563; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 14 - 656
Target Start/End: Complemental strand, 28138817 - 28138174
Alignment:
Q  14 cggggaggcgtttatctccacccttggtgaatgatgtaattgttgttgttccctcaacttctactcttgttactggtttgcctggtttggatagcacact 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138817 cggggaggcgtttatctccacccttggagaatgatgtaattgttgttgttccctcaacttctactcttgttactggtttgcctggtttggatagcacact 28138718  T
Q  114 cccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatgtttgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138717 cccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatgtttgt 28138618  T
Q  214 tcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaacaaccaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138617 tcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaacaaccaa 28138518  T
Q  314 gaacnnnnnnnnnnnnnnnnnnnnnnntagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagt 413  Q
    ||||                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138517 gaacaaaaaggaaaaaaagcagaaaaatagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagt 28138418  T
Q  414 aatcctaaatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagagacatt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138417 aatcctaaatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagagacatt 28138318  T
Q  514 ttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaa-gtac 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28138317 ttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaaggtac 28138218  T
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28138217 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 28138174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 360 - 431
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 431  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||| ||||||| |||| |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga 6982906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  362 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 425  Q
    ||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 612 - 655
Target Start/End: Original strand, 12466438 - 12466481
Alignment:
Q  612 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtc 655  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  12466438 cagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 589
Target Start/End: Original strand, 30587503 - 30587579
Alignment:
Q  509 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccga-ttttaatgcattt 589  Q
    |||||||||||| | ||||||||||||||||||     ||||||||||||||| |||||||||| | | |||||||||||||    
T  30587503 acattttggtctacttttttagattctctcatt-----tgtaatagggtgcaggcccactcctgactatttttaatgcattt 30587579  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 120 - 295
Target Start/End: Original strand, 2048742 - 2048920
Alignment:
Q  120 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttg---gaaccagtgcatgctgcaaatgtttgttct 216  Q
    ||||||| ||| ||| |||||||| |||||| ||||||||||| || ||||||| ||||| ||||||   || ||||||||| |||||  ||||||||||    
T  2048742 ttgtgctatgcctcagcctatcactacttactacacctctctatcagcagacaagcttcctgttttgaaggatccagtgcatactgcagttgtttgttct 2048841  T
Q  217 tctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgt 295  Q
    |||| ||||||||||||||| |||| |||||||||||||| |||||||||||| ||||  |||||||| |||||||||||    
T  2048842 tctgcagctcagagaagtgtagaca-tttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgt 2048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  361 gcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 435  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| ||||| |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatatatgtgactgt 39735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 2048966 - 2049051
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 426  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 429  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 3958945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 613 - 656
Target Start/End: Original strand, 27292985 - 27293028
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  27292985 agtcgtttaattcagccaatcagatttcaagccatgacacgtca 27293028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 656
Target Start/End: Original strand, 4919059 - 4919096
Alignment:
Q  619 ttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  4919059 ttaattcagccaatcagatttcaagccatgacacgtca 4919096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 656
Target Start/End: Original strand, 42976369 - 42976413
Alignment:
Q  612 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    ||||||||||||||| ||||||| ||||||||  |||||||||||    
T  42976369 cagtcgtttaattcaaccaatcagatttcaagagatgacacgtca 42976413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 18559952 - 18559840
Alignment:
Q  189 accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattct 287  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| || |||    
T  18559952 accagtgcatactgcaactgtttgttcttctgaagttcagagaagtgtgaacattttacaaaagttttgaggggattatactaatgaggagcacgaatct 18559853  T
Q  288 agccttgtctgtc 300  Q
    ||| |||||||||    
T  18559852 agctttgtctgtc 18559840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 366 - 431
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  366 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 431  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 21950109 - 21950067
Alignment:
Q  219 tgaagctcagagaagtgtggacattttacaaaagttttggggg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21950109 tgaagctcagagaagtgtggacattttacaaaagttttggggg 21950067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  382 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 435  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgt 41411516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 613 - 656
Target Start/End: Original strand, 14096295 - 14096338
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  14096295 agtcgtttaattcagccaatcagatttcaagacatgacacgtca 14096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 613 - 656
Target Start/End: Complemental strand, 18977264 - 18977221
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||| |||| |||||||||||    
T  18977264 agtcgtttaattcagccaatcagattttaagtgatgacacgtca 18977221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 40275158 - 40275205
Alignment:
Q  382 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 429  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  40275158 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 40275205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 9446973 - 9447042
Alignment:
Q  366 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 435  Q
    |||||| |||||| | |||| ||||| |||||||||||  ||||||| ||||| |||||| |||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgt 9447042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 14555887 - 14555960
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgact 433  Q
    |||||||| ||| | || ||| |||||||||| |||||||||||  ||||||| ||||| |||||| |||||||    
T  14555887 agcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 14555960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 18559799 - 18559723
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatc 417  Q
    ||||||||||||||| || || | |||||   |||| ||| ||||||||||||||||||| ||| ||||||| ||||    
T  18559799 tagacaagtttcaccaaaaagtataagtaacgagcagatacaaactcgttctaaaaagggcgtaatcaaaagcaatc 18559723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 38346763 - 38346691
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 432  Q
    |||||||||||| |||| ||| | ||||||||  |||||| ||| || ||||  |||||||||||||||||||    
T  38346763 agcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatatttgtgac 38346691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 40715703 - 40715887
Alignment:
Q  120 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttct 216  Q
    ||||||| ||| ||||||||| || ||||||||| |||||||| || |||| || |||||  ||||| | ||   ||||||| |||||  || || ||||    
T  40715703 ttgtgctatgcctcaacctataactacttaccactcctctctatcagcagataagcttcctattttgaagcctccagtgcatactgcagttgctttttct 40715802  T
Q  217 tctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgtctgtc 300  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| ||||||||||| ||||    
T  40715803 tttgaagctcagagaagtgtggacattttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgtttgtc 40715887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 431  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtga 6596588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 6596378 - 6596452
Alignment:
Q  222 agctcagagaagtgtggacattttacaaaagttttggggga-ttatactaatggagagcatgattctagccttgt 295  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||| |||||||||||    
T  6596378 agctcagagaagtgtggatattttacaaaagttttgggggagttatcatactgaggagcatgaatctagccttgt 6596452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 19168178 - 19168247
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 429  Q
    ||||||| || | |||||||| ||||||||||||||||||||||  ||||||| ||| | ||| ||||||    
T  19168178 agcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaaaatttgt 19168247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 40715928 - 40716013
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 426  Q
    ||||||| ||||||| || | |||||||||| |||||||| |||||||||  ||||| | ||   ||||||| |||||||||||||    
T  40715928 tagacaaatttcaccaaaaaacacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatatt 40716013  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 431
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  344 acaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 431  Q
    |||||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtga 33417503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 98 - 294
Target Start/End: Original strand, 33417157 - 33417366
Alignment:
Q  98 gtttggatagcacactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttgga--------- 188  Q
    |||||||||||||||||| || | ||||| ||| |||||||||||| ||||||||| |||||||| |  |||||||||||||  |||||||             
T  33417157 gtttggatagcacactcctgcctggtgctatgcctcaacctatcactacttaccacgcctctctatccgcagacaaacttcctattttggaacttgtcaa 33417256  T
Q  189 ---accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgat 284  Q
       ||||||||||| || |  ||| |||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||||||||| ||  ||||||||     
T  33417257 cacaccagtgcatgatggagttgtctgttcttctgcagatcagagatgtgtcgacattttacaacagttttgaggggattatactattgaggagcatgag 33417356  T
Q  285 tctagccttg 294  Q
    ||||||||||    
T  33417357 tctagccttg 33417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 613 - 656
Target Start/End: Original strand, 30624903 - 30624946
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  30624903 agtcgtttaattcaaccaatcagatttcaagtcatgacacgtca 30624946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  366 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 435  Q
    |||||| |||||||| |||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgt 31610111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacata 380  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 120 - 295
Target Start/End: Original strand, 38835898 - 38836075
Alignment:
Q  120 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttct 216  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||| || ||||||| ||||  |||||| |  |   ||||||| |||||  ||||||||||    
T  38835898 ttgtgctatgcctcagcctatcactacttaccacacctctctatcaacagacaagcttcttgttttgaaggctctagtgcatactgcagttgtttgttct 38835997  T
Q  217 tctgaagctcagagaagtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagccttgt 295  Q
    |||| ||||||||  ||||| ||||||||||||||||||||||| |||||||| ||||  |||||||| |||||||||||    
T  38835998 tctgcagctcaga--agtgtagacattttacaaaagttttggggcgattataccaatgaggagcatgagtctagccttgt 38836075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 431  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtga 8308208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 38836121 - 38836206
Alignment:
Q  341 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 426  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||||||||| ||||| |||||  ||||||| ||||| |||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 431  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| ||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 432  Q
    ||||||||| || |||||||| ||||| |||| |||||||||||  ||||||| ||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgac 30559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 613 - 656
Target Start/End: Original strand, 19436711 - 19436754
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||    
T  19436711 agtcgtttaattcagccaatcagatttcaagccatgatacgtca 19436754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 25862676 - 25862613
Alignment:
Q  362 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 425  Q
    |||||||||| |||||||  ||||||| || |||||||||||| | ||||| ||||||||||||    
T  25862676 cacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 613 - 656
Target Start/End: Complemental strand, 29834123 - 29834080
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||    
T  29834123 agtcgtttaattcagccaatcagatttcaagccatgacatgtca 29834080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 494 - 608
Target Start/End: Original strand, 4292984 - 4293095
Alignment:
Q  494 tttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgcc--gattttaatgcatttct 591  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||     ||||||||||||||| ||||||||||||    ||||||||||||| |    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt-----tgtaatagggtgcaggcccactcctgccttttttttaatgcattttt 4293078  T
Q  592 tagcctttatcaaaaaa 608  Q
    |||||||||| ||||||    
T  4293079 tagcctttataaaaaaa 4293095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 613 - 656
Target Start/End: Complemental strand, 50650570 - 50650527
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  50650570 agtcgtttaattcagccaatcagatttcaagccatgacacgtca 50650527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 11536252 - 11536296
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgta 404  Q
    |||||||||||| |||||||| |||||||||  ||||||||||||    
T  11536252 agcacaagtagtgagcacatacaaactcgtttaaaaaagggtgta 11536296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 21848 - 21800
Alignment:
Q  213 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 261  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  21848 ttcttctgcagctcagaaaagtgtggacattttacaaaagttttggggg 21800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  362 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 435  Q
    |||||||||| |||||||  |||||||||| |||||||||||| ||||||| ||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgt 42080685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 17937621 - 17937709
Alignment:
Q  213 ttcttctgaagctcagagaagtgtggacattttac-aaaagttttgggg-gattatactaatggagagcatgattctagccttgtctgt 299  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||  || ||||| |||| ||||||||||    
T  17937621 ttcttctgcagctcagagaagtgttgacattttacaaaaagttttggggtgattacactactgaggaacatgaatctaaccttgtctgt 17937709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 613 - 656
Target Start/End: Original strand, 27286203 - 27286246
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtca 656  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  27286203 agtcgtttaattcagccaatcagatttcaagccatgacacgtca 27286246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 17867409 - 17867361
Alignment:
Q  213 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 261  Q
    |||||||  |||| ||||||||||||||||||||||||| |||||||||    
T  17867409 ttcttctacagcttagagaagtgtggacattttacaaaatttttggggg 17867361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 43403941 - 43403894
Alignment:
Q  382 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 429  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  43403941 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 43403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 613 - 652
Target Start/End: Complemental strand, 52385992 - 52385953
Alignment:
Q  613 agtcgtttaattcagccaatcaaatttcaagtcatgacac 652  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  52385992 agtcgtttaattcagccaatcagatttcaagccatgacac 52385953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 17937528 - 17937584
Alignment:
Q  132 tcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttgga 188  Q
    |||||||||||| ||| | ||||||||||||||| ||||||| | ||| ||||||||    
T  17937528 tcaacctatcactactaaacacacctctctaacagcagacaagcgtcctgttttgga 17937584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 429
Target Start/End: Complemental strand, 16599 - 16533
Alignment:
Q  363 acaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 429  Q
    ||||| ||| ||||||||||||||||||| || ||||||||  ||||||| ||||| ||||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatatttgt 16533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 18923 - 18991
Alignment:
Q  360 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 429  Q
    ||||||| || | |||||||| ||||||||||| ||||||||||  ||||||| ||||| ||||||||||    
T  18923 agcacaattattgagcacatacaaactcgttct-aaaagggtgtcatcaaaagcaatcccaaatatttgt 18991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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