View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0216-INSERTION-4 (Length: 579)
Name: NF0216-INSERTION-4
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216-INSERTION-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 55 - 579
Target Start/End: Original strand, 10323093 - 10323615
Alignment:
| Q |
55 |
cattcaactaaatccattagctaacaaaattagttgtttttcataatattctaggaactaaattaatgtacttttcatagttagaatcttttagttgata |
154 |
Q |
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| T |
10323093 |
cattcaactaaatccattagctaacaaaattagttgtttttcataatattctaggaactaaattaatgtacttttcatagttagaatcttttagttgata |
10323192 |
T |
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| Q |
155 |
taaatattttagccaccaaaataacggagagtgataatttagataccaaattaactattctttaaaatattctccattgtaaaataaaaataatttttca |
254 |
Q |
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| T |
10323193 |
taaatattttagccaccaaaataacggagagtgataatttagataccaaattaactattctttaaaatactctccattgtaaaataaaaataatttttca |
10323292 |
T |
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| Q |
255 |
gtcattaaaatactggaatatggtataaaatgactcgcaagttggatcacttgtagtgtcacatcaaacatttgtggtggtattacaatttacaaatata |
354 |
Q |
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| T |
10323293 |
gtca-taagatactggaatatggtataaaatgactcgcaagttggatcacttgtagtgtcacatcagacatttgtggtggtattacaatttacaaatata |
10323391 |
T |
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| Q |
355 |
ttgtatttattgaaacaattgtgaatataaaggagctgatcattgatagatcagtacatgacaaagatacgcatgtatnnnnnnnnttagaataagaatt |
454 |
Q |
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| T |
10323392 |
ttgtatttattgaaacaattgtgaatataaaggagctgatcattgatagatcagtacatgacaaagatacgcatgtat-aaaaaaattagaataagaatt |
10323490 |
T |
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| Q |
455 |
caactttgtttacattggtagtttgtcctttgttactttaattgaaaggtgctccaaatatttaacattatcattaatttactaactcaaagaagatcct |
554 |
Q |
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| T |
10323491 |
caactttgtttacattggtagtttgtcctttgttactttaattgaaaggtgctccaaatatttaacattatcattaatttactaactcaaagaagatcct |
10323590 |
T |
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| Q |
555 |
aagttgattttcgaaatattgtttg |
579 |
Q |
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| T |
10323591 |
aagttgattttcgaaatattgtttg |
10323615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 14198352 - 14198405
Alignment:
| Q |
76 |
taacaaaattagttgtttttcataatattctaggaactaaattaatgtactttt |
129 |
Q |
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| T |
14198352 |
taacaaaattgattgtttttcataatagtttagaaactaaattaatgtattttt |
14198405 |
T |
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