View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0216-INSERTION-5 (Length: 672)
Name: NF0216-INSERTION-5
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216-INSERTION-5 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 4644747 - 4644377
Alignment:
| Q |
8 |
cacatagtgctgaatcattgtaattgtaagggcctccacctccacaacaaactttaaaagcatttccatcaaaccctgttacaatagtgaagcaaatcct |
107 |
Q |
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| T |
4644747 |
cacatagtgctgaatcattgtaattgtaagggcctccacctccacaacaaactttaaaagcatttccatcaaaccctgttacaatagtgaagcaaatcct |
4644648 |
T |
|
| Q |
108 |
tgtatcactcttcaatgatttagtggcctactgaaaattcatgacatagagactctctagtttagttctgctgtaaattattaattcattttatctaact |
207 |
Q |
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| T |
4644647 |
tgtatcactcttcaatgatttagtggcatactgaaaattcatgacatagagactctctagtttagttctgctgtaaattattgattcatgttatctaact |
4644548 |
T |
|
| Q |
208 |
aataacaatgactaaataacacatgaatgtccatgaggtgctagtttagtggtaaggatttgatcttgtaatatcaaaggacatagttaaaatctccctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4644547 |
aataacaatgactaaataacacatgaatgtccatgaggtgctagtttagtggtaaggatttgaccttgtaatatcaaaggacatagttaaaatctccctc |
4644448 |
T |
|
| Q |
308 |
gtggacaattgcaaaatgacaatattgccactaattaataatataaatatcacatgaaaatgagggctgtt |
378 |
Q |
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| T |
4644447 |
gtggacaattgcaaaatgacaatattgccactaattaataatataaatatcacatgaaaatgagggctgtt |
4644377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 420 - 662
Target Start/End: Complemental strand, 4644335 - 4644093
Alignment:
| Q |
420 |
tgattgacaattcaggaactgaaccgagttcggttcagttgagttcacgaattatccttgattgtttggttctttccggtgcagctctgttttgttcaat |
519 |
Q |
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| T |
4644335 |
tgattgacaattcaggaactgaaccgagttcggttcagttgagttcacgaattatccttgattgtttggttctttccggtgcagctctgttttgttcaat |
4644236 |
T |
|
| Q |
520 |
ttaacagttcttcagnnnnnnnaaacagtcatactattcaatttggttcgattttgggcttttttcaacattcctaattatcagttaataataaaaattt |
619 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4644235 |
ttaacagttcttcagtttttttaaacagtcatactattcaatttggttcgattttgggcttttctcaacattcctaattatcagttaataataaaaattt |
4644136 |
T |
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| Q |
620 |
gttacaatgaggtctgcaaaaaatgtcgaaaaagtatagtttg |
662 |
Q |
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| T |
4644135 |
gttacaatgaggtctgcaaaaaatgtcgaaaaagtatagtttg |
4644093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 4662874 - 4662807
Alignment:
| Q |
8 |
cacatagtgctgaatcattgtaattgtaagggcctccacctccacaacaaactttaaaagcatttcca |
75 |
Q |
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| T |
4662874 |
cacatagtgccgtatcattgcaattttcaagacttccatctccacaacaaactttaaaagcatttcca |
4662807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 4666478 - 4666422
Alignment:
| Q |
8 |
cacatagtgctgaatcattgtaattgtaagggcctccacctccacaacaaactttaa |
64 |
Q |
| |
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|||||||||| | |||||||||||| | | | | ||||||||||||||||||||||| |
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| T |
4666478 |
cacatagtgccgtatcattgtaattttcaagacttccacctccacaacaaactttaa |
4666422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 611
Target Start/End: Complemental strand, 7426046 - 7426013
Alignment:
| Q |
578 |
cttttttcaacattcctaattatcagttaataat |
611 |
Q |
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| T |
7426046 |
cttttttcaacagtcctaattatcagttaataat |
7426013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 627
Target Start/End: Complemental strand, 51215834 - 51215749
Alignment:
| Q |
542 |
aaacagtcatactattcaatttggttcgattttgggcttttttcaacattcctaattatcagttaataataaaaatttgttacaat |
627 |
Q |
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||||||||||| ||||||||||||| |||| || ||| ||||||| ||||||||||| ||||||||| |||||| |||||| |
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| T |
51215834 |
aaacagtcataaaattcaatttggtttcgtttttggttttcttcaacagccctaattatcaattaataatagcaatttggtacaat |
51215749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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