View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0216-INSERTION-7 (Length: 749)
Name: NF0216-INSERTION-7
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216-INSERTION-7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 315 - 734
Target Start/End: Original strand, 27328958 - 27329376
Alignment:
| Q |
315 |
ctagacatttcttcgattagaagtgtctgtgcaagcaaagtttatgctttcattatagaaattatcaaaattgattttaattatccttaccaaacctgtt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
27328958 |
ctagacatttcttcgattagaagtgtctgttcaagcaaagtttatgctttcattatagaaattatcaaaattgattttaattatcctaaccaaacatgtt |
27329057 |
T |
|
| Q |
415 |
tttgttaaagaaacacataattggctaattgatgttccatatttgtcttcagataattaccaatgggaaatacaagagtattgttcatcgtgctgtggtg |
514 |
Q |
| |
|
| || ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329058 |
tcggt-aaagaaaaacataagtagctaattgatgttccatatttgtcttcagataattaccaatgggaaatacaagagtattgttcatcgtgctgtggtg |
27329156 |
T |
|
| Q |
515 |
atgaataagaaagctgcaagaatttctgttggtacagcacatgggcccacacttgacaccattgtcacccctgcaccagagctgcttagcaaggataacc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329157 |
atgaataagaaagctgcaagaatttctgttgggacagcacatgggcccactcttgacaccattgtcacccctgcaccagagctgcttagcaaggataacc |
27329256 |
T |
|
| Q |
615 |
cctcagcatatagaggcactacatacagagattacttgcagcttcaacaaagtcgtgaattagcgagaaattcttgcttagattatattcgaatttaaat |
714 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329257 |
cctcagcatatagaggcattacatacagagattacttgcagcttcaacaaagtcgtgaattagcaagaaattcttgcttagattatattcgaatttaaat |
27329356 |
T |
|
| Q |
715 |
aaaaactttgttatgcttgc |
734 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27329357 |
aaaaactttgttatgcttgc |
27329376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1045 times since January 2019
Visitors: 2388