View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0216_high_10 (Length: 286)

Name: NF0216_high_10
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0216_high_10
NF0216_high_10
[»] chr6 (2 HSPs)
chr6 (176-258)||(24127646-24127728)
chr6 (11-92)||(24127481-24127562)
[»] chr8 (2 HSPs)
chr8 (12-92)||(45160705-45160785)
chr8 (176-258)||(45160537-45160619)
[»] chr3 (6 HSPs)
chr3 (176-258)||(8722970-8723052)
chr3 (176-258)||(9074857-9074939)
chr3 (196-258)||(8716656-8716718)
chr3 (196-258)||(9068543-9068605)
chr3 (37-92)||(8716496-8716551)
chr3 (37-92)||(9068383-9068438)
[»] chr7 (1 HSPs)
chr7 (176-248)||(9519047-9519119)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 24127646 - 24127728
Alignment:
Q  176 agagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24127646 agagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcagagtggaattatctcacttaaaataaggt 24127728  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 24127481 - 24127562
Alignment:
Q  11 cagagataaacaagaaaatatatctacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24127481 cagagataaacaagaaaatatatatacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 24127562  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 45160785 - 45160705
Alignment:
Q  12 agagataaacaagaaaatatatctacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  45160785 agagataaacaagaaaatatatctacttaaatttagaacaagataactttcatatgaaattgtgttaatcacatacccaac 45160705  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 45160619 - 45160537
Alignment:
Q  176 agagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  45160619 agagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggt 45160537  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 8722970 - 8723052
Alignment:
Q  176 agagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| |||||||||    
T  8722970 agagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggt 8723052  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 9074857 - 9074939
Alignment:
Q  176 agagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| |||||||||    
T  9074857 agagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggt 9074939  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 8716656 - 8716718
Alignment:
Q  196 atatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  8716656 atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggt 8716718  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 9068543 - 9068605
Alignment:
Q  196 atatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  9068543 atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggt 9068605  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 8716496 - 8716551
Alignment:
Q  37 cttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  8716496 cttaaatttagaacaagataactttcacatgaaattgtgttgatcacatacccaac 8716551  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 9068383 - 9068438
Alignment:
Q  37 cttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  9068383 cttaaatttagaacaagataactttcacatgaaattgtgttgatcacatacccaac 9068438  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 9519119 - 9519047
Alignment:
Q  176 agagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcactt 248  Q
    |||||||||||||||||| |||| ||| |||||||| ||||| ||||  | ||| ||||||||||||||||||    
T  9519119 agagaaactaacagttttggataattctttgccgatttccatattgcataggcatagtggaattatctcactt 9519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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