View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0216_high_14 (Length: 230)
Name: NF0216_high_14
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0216_high_14
[» ] scaffold0039 (1 HSPs)
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 29074080 - 29073861
Alignment:
Q
10
gcacagatagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaa
109
Q
||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
T
29074080
gcacacatagaaagtattttatataacacaaagcgtagtagaaaagaacactaaagtcttacaaaaacaataaaccgaacaagaccaggaaataaataaa
29073981
T
Q
110
aattcaatgataatattaatgtaattattgcaaggattttggaggtaattattgcatcctgcccatgaatactcaggtcaattcatctcgtcacaaacct
209
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| ||
T
29073980
aattcaatgataatattaatgtaattattgcaaggattttggaggtaattattgcatcctgccgatgaatacacaagtaaattcatctcgtcacaaaact
29073881
T
Q
210
aatgtaccattgttcattga
229
Q
||||||||||||||||||||
T
29073880
aatgtaccattgttcattga
29073861
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 29103501 - 29103404
Alignment:
Q
16
atagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaatt
113
Q
|||||||||||| ||| || ||| ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||||
T
29103501
atagaaagtattctatttagtgcaaggcgtattagaatagaacactaaagtcttacaaaagcaacaaaccgaacaagatttggaaataaataaaaatt
29103404
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 55729 - 55789
Alignment:
Q
24
tattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaac
84
Q
|||| ||||||||||| ||||| ||||||| ||||||| |||||||| ||||||| ||||
T
55729
tattatatctaacacagtgcgtactagaataaaacactagagtcttacgaaaacaacaaac
55789
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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