View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0216_high_4 (Length: 404)
Name: NF0216_high_4
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 34340487 - 34340349
Alignment:
| Q |
30 |
gttgtaaccataatttcattcttagtattgttattgataagcatttcattaattatgaaatgaaaaggcagcacttgatttcattgctaagctttaattt |
129 |
Q |
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| T |
34340487 |
gttgtaaccataatttcattcttagtattgttattgataagcatttcattaattatgaaatgaaaaggcagcacttgatttcattgctaagctttaattt |
34340388 |
T |
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| Q |
130 |
ttggagagaagggtgaatatgcataatccaatcagaaga |
168 |
Q |
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| T |
34340387 |
ttggagagaagggtgaatatgcataatccaatcagaaga |
34340349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 34340354 - 34340288
Alignment:
| Q |
214 |
agaagaatattatccattaagaatctgtatcagtagttaaaaccatataaaatacaatcccaaatat |
280 |
Q |
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| T |
34340354 |
agaagaatattatccattaagaatctgtatcaatagttaaaaccatataaaatacaataccaaatat |
34340288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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