View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0216_high_7 (Length: 350)
Name: NF0216_high_7
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 43 - 322
Target Start/End: Complemental strand, 24688954 - 24688675
Alignment:
| Q |
43 |
acatcatcaaatactccaaattagtctgctgtgccacagcgtgaatcgaaccttccagcaacctcacatccccaagtggcacttctttcagaaatcctac |
142 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24688954 |
acatcaacaaatactccaaattagtctgctgtgccacagcgtgaatcgaaccttccagcaacctcacatccccaagtggcacttctttcagaaatcccac |
24688855 |
T |
|
| Q |
143 |
tggtggtttaaacacacccaaattcttgattttcctatacattaaagcccaatcttgttgattttcttctgataagatcttccttggaagcaaagctgcc |
242 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24688854 |
tggtggcttaaacacacccaaattcttgattttcctatacattaaagcccaatcatgttggttttcttctgataagatcttccttggaagcaaagttgcc |
24688755 |
T |
|
| Q |
243 |
caagcagattcatcagttggtgtcacatgataatgagacatcacttctttcttccatgtctcattctttgatgcaaatag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24688754 |
caagcagattcatcagttggtgtcacatgataatgagacatcacttctttcttccatgtctcattctttgatgcaaatag |
24688675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 50 - 316
Target Start/End: Complemental strand, 24728454 - 24728188
Alignment:
| Q |
50 |
caaatactccaaattagtctgctgtgccacagcgtgaatcgaaccttccagcaacctcacatccccaagtggcacttctttcagaaatcctactggtggt |
149 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| || || |||||||| ||||| |||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
24728454 |
caaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttgagaaatccaactggtggc |
24728355 |
T |
|
| Q |
150 |
ttaaacacacccaaattcttgattttcctatacattaaagcccaatcttgttgattttcttctgataagatcttccttggaagcaaagctgcccaagcag |
249 |
Q |
| |
|
||| ||| | | |||||| |||| ||||||| | |||||| || |||| |||||||| ||||| | |||||||||||||||| |||||||||| | |
|
|
| T |
24728354 |
ttagacagatcggcattcttcatttccctatacttagcagcccagtcacgttggttttcttccgataaaagcttccttggaagcaaatctgcccaagccg |
24728255 |
T |
|
| Q |
250 |
attcatcagttggtgtcacatgataatgagacatcacttctttcttccatgtctcattctttgatgc |
316 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24728254 |
attcatcagttggtgtcaaatgatagtgagacatcacttctttcttccatgtttcattctttgatgc |
24728188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 316
Target Start/End: Complemental strand, 24719272 - 24718987
Alignment:
| Q |
43 |
acatcatcaaatactccaaattagtctgctgtgccacagcgtgaatcgaaccttccagcaacctcacatccccaagtggcacttctttcagaaatcctac |
142 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| ||| || || |||||||| ||||||||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
24719272 |
acatcaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaacctcacatccccaagtggaacttctttgagaaatccaac |
24719173 |
T |
|
| Q |
143 |
tggtggtttaaacacacccaaattcttgattttcctatacattaaagcccaatcttgttgattttcttctgataag---atcttccttggaagcaaagct |
239 |
Q |
| |
|
||||| ||| ||||| | |||||| |||| ||||||| | ||||||||| |||| ||||||| || |||| |||| | |||||| || || |
|
|
| T |
24719172 |
aggtggcttagacacatcggcattcttcatttccctatacttagcagcccaatcacgttggttttcttgtgttaagaacatctcctttggaatcatttct |
24719073 |
T |
|
| Q |
240 |
gcccaagcagattcatcagttggtgtcacatgataatgaga---------catcacttctttcttccatgtctcattctttgatgc |
316 |
Q |
| |
|
|||||| |||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24719072 |
tgccaagccgattcatcggatggtgtcacatgaacatgagactgatacatcatcacttctttcttccatgtctcattctttgatgc |
24718987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1687 times since January 2019
Visitors: 2393