View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0216_high_9 (Length: 316)

Name: NF0216_high_9
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0216_high_9
NF0216_high_9
[»] chr4 (15 HSPs)
chr4 (1-139)||(5159986-5160125)
chr4 (1-139)||(5195628-5195767)
chr4 (1-136)||(5172905-5173041)
chr4 (1-136)||(4842484-4842620)
chr4 (1-139)||(5182234-5182370)
chr4 (1-139)||(4856961-4857097)
chr4 (132-221)||(4842673-4842762)
chr4 (132-221)||(5172763-5172852)
chr4 (134-221)||(5159847-5159934)
chr4 (132-221)||(5182095-5182184)
chr4 (132-221)||(5195489-5195578)
chr4 (1-139)||(5213794-5213930)
chr4 (132-206)||(5213670-5213744)
chr4 (21-136)||(5202773-5202885)
chr4 (2-49)||(7142256-7142304)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5160125 - 5159986
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  5160125 attgaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagc 5160026  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5160025 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 5159986  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5195767 - 5195628
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  5195767 attgaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagc 5195668  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5195667 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 5195628  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5173041 - 5172905
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| | ||||||||    
T  5173041 attgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagc 5172942  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaattt 136  Q
    |||| || | | |||||||||||||||||||||||||    
T  5172941 caaaatgataagtgaaaatgatccttgcatgtaattt 5172905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4842484 - 4842620
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||  | |||||||| | ||||||||    
T  4842484 attgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagc 4842583  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaattt 136  Q
    |||| || | | |||||||||||||||||||||||||    
T  4842584 caaattgataagtgaaaatgatccttgcatgtaattt 4842620  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5182370 - 5182234
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||| ||||||||||| || ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||    
T  5182370 attgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagc 5182274  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5182273 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 5182234  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 4856961 - 4857097
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||| ||||||||||| || ||||||||||||||| | ||||||   ||||||| || |||||||||||||  | |||||||  | ||||||||    
T  4856961 attgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagc 4857057  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 139  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  4857058 caaagtggtcaatgaaaatgatccttgcatgtaatttcca 4857097  T

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Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 4842673 - 4842762
Alignment:
Q  132 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt 221  Q
    ||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  4842673 aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgt 4842762  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5172852 - 5172763
Alignment:
Q  132 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt 221  Q
    ||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  5172852 aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgt 5172763  T

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Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 5159934 - 5159847
Alignment:
Q  134 tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt 221  Q
    ||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  5159934 tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgt 5159847  T

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Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5182184 - 5182095
Alignment:
Q  132 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt 221  Q
    ||||||||||||||| |||||  ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  5182184 aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagcactaaacatgt 5182095  T

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Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5195578 - 5195489
Alignment:
Q  132 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt 221  Q
    ||||||||||||||| |||||  ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  5195578 aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgt 5195489  T

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Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5213930 - 5213794
Alignment:
Q  1 attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc 99  Q
    |||||||||| || |||||||| || |||||||||||||||| | | ||| |||| | |   |||||||||||||||  | | |||||| | ||||||||    
T  5213930 attgaaatttgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgctttgt---gatgaaatatatagatgctggagattggagtgattagc 5213834  T
Q  100 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5213833 caaagtgctcaatgaaaatgatccttgcatgtaatttcca 5213794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 5213744 - 5213670
Alignment:
Q  132 aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtt 206  Q
    ||||||||||||||||||||| |||||| |||||||   | |||||||||||||||||||||||||| |||||||    
T  5213744 aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagtt 5213670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
Q  21 ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga 120  Q
    ||||||||| ||||||||||||| ||||| |||| | |   || |||||||||||| || ||||  |||| ||||||||||||||||| | ||||||||     
T  5202885 ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg 5202789  T
Q  121 tccttgcatgtaattt 136  Q
    ||||||| ||| ||||    
T  5202788 tccttgcgtgtgattt 5202773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 7142304 - 7142256
Alignment:
Q  2 ttgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactcca 49  Q
    ||||||| ||||||||||||| || ||||||||||||| ||||||||||    
T  7142304 ttgaaatctaggaaaccactttgtattttcagtttcaacgtgtactcca 7142256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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