View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0216_low_1 (Length: 947)
Name: NF0216_low_1
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216_low_1 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 832; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 96 - 947
Target Start/End: Complemental strand, 8317337 - 8316486
Alignment:
| Q |
96 |
gatcgaacaaatgaattagttgtgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317337 |
gatcgaacaaatgaattagttgtgctgtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatg |
8317238 |
T |
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| Q |
196 |
ggatgccgcataataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagttt |
295 |
Q |
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| T |
8317237 |
ggatgccgcattataaaattcaatgtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagttt |
8317138 |
T |
|
| Q |
296 |
ttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317137 |
ttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggt |
8317038 |
T |
|
| Q |
396 |
gtccaaaatgaacagaaatgctgggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgaga |
495 |
Q |
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| T |
8317037 |
gtccaaaatgaacagaaatgctgggaaattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgaga |
8316938 |
T |
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| Q |
496 |
tgtaagagcagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggat |
595 |
Q |
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| T |
8316937 |
tgtaagagcagaaaaggggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggat |
8316838 |
T |
|
| Q |
596 |
atatcacgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgct |
695 |
Q |
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| T |
8316837 |
atatcacgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgct |
8316738 |
T |
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| Q |
696 |
gctcctttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgcc |
795 |
Q |
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| T |
8316737 |
gctcctttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttcc |
8316638 |
T |
|
| Q |
796 |
gcaaacatgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaata |
895 |
Q |
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| T |
8316637 |
gcaaacatgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaata |
8316538 |
T |
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| Q |
896 |
agataacaagagggagaaaactaaccttatcatagtcatagcaataatcagt |
947 |
Q |
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| T |
8316537 |
agataacaagagggagaaaactaaccttatcatagtcatagcaataatcagt |
8316486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
220 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
305 |
Q |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 219 - 596
Target Start/End: Original strand, 1745 - 2125
Alignment:
| Q |
219 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
318 |
Q |
| |
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|||||||| ||||||||||| |||||||||| | |||| || ||||| || ||||||| |||| ||| |||||| |||| ||||||||| | | ||| |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
|
| Q |
319 |
tggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
418 |
Q |
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|||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| ||||| | |||||| ||| |||||||| ||| | | |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
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| Q |
419 |
ggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagct |
518 |
Q |
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| T |
1945 |
ggaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagtt |
2044 |
T |
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| Q |
519 |
gataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
596 |
Q |
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||||||| |||||||||||| |||| | || ||||||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
2045 |
tataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
281 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
380 |
Q |
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||||||| |||||| |||| ||||||||| ||| ||| |||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| | |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
|
| Q |
381 |
tgaggagttttaggtgtccaaaatgaa |
407 |
Q |
| |
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|||||| ||| || ||| |||||||| |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 636
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
563 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
636 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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