View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0216_low_10 (Length: 316)
Name: NF0216_low_10
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0216_low_10
Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5160125 - 5159986
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||||
T
5160125
attgaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagc
5160026
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
139
Q
||||||||||||||||||||||||||||||||||||||||
T
5160025
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
5159986
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5195767 - 5195628
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||||
T
5195767
attgaaatttaggaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagc
5195668
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
139
Q
||||||||||||||||||||||||||||||||||||||||
T
5195667
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
5195628
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5173041 - 5172905
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| | ||||||||
T
5173041
attgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagc
5172942
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaattt
136
Q
|||| || | | |||||||||||||||||||||||||
T
5172941
caaaatgataagtgaaaatgatccttgcatgtaattt
5172905
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4842484 - 4842620
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||| | |||||||| | ||||||||
T
4842484
attgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagc
4842583
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaattt
136
Q
|||| || | | |||||||||||||||||||||||||
T
4842584
caaattgataagtgaaaatgatccttgcatgtaattt
4842620
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5182370 - 5182234
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||| ||||||||||| || ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||||
T
5182370
attgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagc
5182274
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
139
Q
||||||||||||||||||||||||||||||||||||||||
T
5182273
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
5182234
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 4856961 - 4857097
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||| ||||||||||| || ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||||
T
4856961
attgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagc
4857057
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
139
Q
||||||| ||||||||||||||||||||||||||||||||
T
4857058
caaagtggtcaatgaaaatgatccttgcatgtaatttcca
4857097
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 4842673 - 4842762
Alignment:
Q
132
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt
221
Q
||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||
T
4842673
aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgt
4842762
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5172852 - 5172763
Alignment:
Q
132
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt
221
Q
||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||
T
5172852
aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgt
5172763
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 5159934 - 5159847
Alignment:
Q
134
tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt
221
Q
||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
T
5159934
tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgt
5159847
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5182184 - 5182095
Alignment:
Q
132
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt
221
Q
||||||||||||||| ||||| ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
T
5182184
aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgcttaaacactctggaagtttagcactaaacatgt
5182095
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5195578 - 5195489
Alignment:
Q
132
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtttagcaccaaacatgt
221
Q
||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||
T
5195578
aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgt
5195489
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5213930 - 5213794
Alignment:
Q
1
attgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagc
99
Q
|||||||||| || |||||||| || |||||||||||||||| | | ||| |||| | | ||||||||||||||| | | |||||| | ||||||||
T
5213930
attgaaatttgggtaaccactttgtcttttcagtttcaatgtttgcaccaatgctttgt---gatgaaatatatagatgctggagattggagtgattagc
5213834
T
Q
100
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
139
Q
||||||||||||||||||||||||||||||||||||||||
T
5213833
caaagtgctcaatgaaaatgatccttgcatgtaatttcca
5213794
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 5213744 - 5213670
Alignment:
Q
132
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgcttaaacactcaggaagtt
206
Q
||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||| |||||||
T
5213744
aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgcttaaacactcgggaagtt
5213670
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
Q
21
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga
120
Q
||||||||| ||||||||||||| ||||| |||| | | || |||||||||||| || |||| |||| ||||||||||||||||| | ||||||||
T
5202885
ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg
5202789
T
Q
121
tccttgcatgtaattt
136
Q
||||||| ||| ||||
T
5202788
tccttgcgtgtgattt
5202773
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 7142304 - 7142256
Alignment:
Q
2
ttgaaatttaggaaaccactt-gttttttcagtttcaatgtgtactcca
49
Q
||||||| ||||||||||||| || ||||||||||||| ||||||||||
T
7142304
ttgaaatctaggaaaccactttgtattttcagtttcaacgtgtactcca
7142256
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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