View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0216_low_14 (Length: 277)

Name: NF0216_low_14
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0216_low_14
NF0216_low_14
[»] chr3 (15 HSPs)
chr3 (46-277)||(8957064-8957295)
chr3 (46-241)||(8962504-8962699)
chr3 (46-243)||(8965219-8965416)
chr3 (46-277)||(8988288-8988522)
chr3 (103-245)||(9029113-9029255)
chr3 (104-245)||(9034621-9034762)
chr3 (103-238)||(9026154-9026289)
chr3 (106-245)||(8746957-8747096)
chr3 (103-245)||(9101228-9101370)
chr3 (105-245)||(9023452-9023592)
chr3 (111-224)||(9108802-9108915)
chr3 (105-224)||(9019290-9019409)
chr3 (102-245)||(8755580-8755723)
chr3 (108-238)||(9015428-9015558)
chr3 (110-224)||(9112114-9112228)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 46 - 277
Target Start/End: Original strand, 8957064 - 8957295
Alignment:
Q  46 catcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8957064 catcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccaccgtggcctcggcccaagaccttagtccgtcgttagctccagc 8957163  T
Q  146 acccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8957164 acccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcgccattttcaagaactaa 8957263  T
Q  246 gagaagtccattttgtgggaacactattaatt 277  Q
    ||||||||||||||||||||||||||||||||    
T  8957264 gagaagtccattttgtgggaacactattaatt 8957295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 8962504 - 8962699
Alignment:
Q  46 catcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagc 145  Q
    |||||||||| ||||||||||||||||||||| | | |||||||||||| ||  |||| |||||||||||||||||||||||||| ||||||||||||||    
T  8962504 catcatcatctgctaccacaatgaagttgttctttggttttgtcatcgtgtttgccgctgtggcctcggcccaagaccttagtccctcgttagctccagc 8962603  T
Q  146 acccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaa 241  Q
    ||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||| || | || ||||||||    
T  8962604 accaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaattgtgctttcaatgctcgctatcttcaagaa 8962699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 8965219 - 8965416
Alignment:
Q  46 catcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagc 145  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| ||  || | |||||||||||||||||||||||||||||||| ||||||||    
T  8965219 catcatcatcaactaccacaatgaaattgttcttcgtttttgtcatcgtctttgccacagtggcctcggcccaagaccttagtccgtcgttggctccagc 8965318  T
Q  146 acccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaact 243  Q
    |||  ||||||| ||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| || | || ||||||||||    
T  8965319 accaagtcctgacgctggagctgccggatctgttacaagttctatggcaatgatcggagcttcaattgtgctgtcaatgctcgcaatcttcaagaact 8965416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 46 - 277
Target Start/End: Original strand, 8988288 - 8988522
Alignment:
Q  46 catcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagc 145  Q
    |||||||||||||||||||||| ||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||  |||||||    
T  8988288 catcatcatcagctaccacaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagaccttagtccctcgttgtctccagc 8988387  T
Q  146 acccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    ||| |||||||| | ||||| |||| | | || |||||||| |||||||||||||||||||||||| || ||||||||| || | || |||||||||| |    
T  8988388 accaggtcctgacgttggagctgccagttctgctacaagttatgtggctatgatcggagcttcaatcgtactgtcaatgctcgctatcttcaagaactga 8988487  T
Q  246 gagaagt---ccattttgtgggaacactattaatt 277  Q
    || || |   ||||||||| |||||||||||||||    
T  8988488 gaaaattgagccattttgttggaacactattaatt 8988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 9029113 - 9029255
Alignment:
Q  103 ccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgg 202  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||| |||| | |||||||||| | ||||||||||||    
T  9029113 ccgtggcctctgcccaagaccttagtccttcgttggctccagcaccaggtcctgatgctggagctgctggatctattacaagttcagcggctatgatcgg 9029212  T
Q  203 agcttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    || |||||||||| |||||||| || |||| |||||| |||||    
T  9029213 agtttcaattgtgttgtcaatgctcgccatcttcaagcactaa 9029255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 9034621 - 9034762
Alignment:
Q  104 cgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgga 203  Q
    ||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||    
T  9034621 cgtggcctctgcccaagaccttagtccttcgttggctccggcaccaggtcctgatgctggagctgctggatctgttgcaagttcggtggctatgatcgga 9034720  T
Q  204 gcttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    | |||||||||| |||||||| || |||| |||||| |||||    
T  9034721 gtttcaattgtgttgtcaatgctcgccatcttcaagcactaa 9034762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 9026154 - 9026289
Alignment:
Q  103 ccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgg 202  Q
    |||||||||| |||||||| |||||||| ||||| ||||||||||| ||| |||||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  9026154 ccgtggcctctgcccaagatcttagtccttcgttggctccagcaccaggttctgatgctggagttgctggatctgttacaagttcagtggcaatgatcgg 9026253  T
Q  203 agcttcaattgtgctgtcaatggtcaccattttcaa 238  Q
    || |||| ||||  |||||||| || |||| |||||    
T  9026254 agtttcagttgtattgtcaatgatcgccatcttcaa 9026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 8746957 - 8747096
Alignment:
Q  106 tggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagc 205  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||| ||  |||| |||||||| ||| ||||||||||| ||||     
T  8746957 tggcctctgcccaagacctcagtccctcgttggctccagcaccaggtcctgatgttggagctgttggatctgttacaaattcagtggctatgattggagt 8747056  T
Q  206 ttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    |||||||||| |||||||| || |||| |||||| |||||    
T  8747057 ttcaattgtgttgtcaatgctcgccatcttcaagcactaa 8747096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 9101228 - 9101370
Alignment:
Q  103 ccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgg 202  Q
    |||||||||| |||||| |||| ||||| ||||| ||||||||||| || ||||||||||||| ||| || | |||||||||||| ||||||||||||||    
T  9101228 ccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcgg 9101327  T
Q  203 agcttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    || |||||||||  |||||||| || |||| || ||| |||||    
T  9101328 agtttcaattgtattgtcaatgctcgccatctttaagcactaa 9101370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 9023452 - 9023592
Alignment:
Q  105 gtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggag 204  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||| |||| |||||||||||| ||||||||| |||||     
T  9023452 gtggcctctgcccaagaccttagtccctcgttggctccggcaccaggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaa 9023551  T
Q  205 cttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
     |||  ||||  |||||||| || |||| |||||| |||||    
T  9023552 tttcggttgtattgtcaatgctcgccatcttcaagcactaa 9023592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 9108802 - 9108915
Alignment:
Q  111 tcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaa 210  Q
    ||||| |||||||| ||||| || || ||||||||| | ||||||||||  |||| |||||||| |||||||||||| ||||| ||||||||||||||||    
T  9108802 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaa 9108901  T
Q  211 ttgtgctgtcaatg 224  Q
    ||||  ||||||||    
T  9108902 ttgtcttgtcaatg 9108915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 9019290 - 9019409
Alignment:
Q  105 gtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggag 204  Q
    ||||||||||| |||||||||||||| || |  ||||| ||||| |||||||||| ||| | |   |||| |||||| ||||| || |||||||||||||    
T  9019290 gtggcctcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggag 9019389  T
Q  205 cttcaattgtgctgtcaatg 224  Q
    ||||||||||| ||||||||    
T  9019390 cttcaattgtgttgtcaatg 9019409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 8755580 - 8755723
Alignment:
Q  102 gccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcg 201  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | ||||||||| || | ||| |||| |||||||| ||| || |||||||| |    
T  8755580 gccgtggcttcggctcaagacctcagtccctcgttggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattg 8755679  T
Q  202 gagcttcaattgtgctgtcaatggtcaccattttcaagaactaa 245  Q
    ||||||| ||| |  |||| ||| || |||| ||||||||||||    
T  8755680 gagcttcgattattttgtctatgctcgccatcttcaagaactaa 8755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 9015428 - 9015558
Alignment:
Q  108 gcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagctt 207  Q
    |||||||| |||||||| || || |||||  |||| ||||| ||||||||||| ||||  || |||| |||||||| ||| ||| ||||| | |||| ||    
T  9015428 gcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctggatatgttacaaattcagtgactatggttggagttt 9015527  T
Q  208 caattgtgctgtcaatggtcaccattttcaa 238  Q
    |||||||  |||||||| || |||| |||||    
T  9015528 caattgtattgtcaatgctcgccatcttcaa 9015558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 9112114 - 9112228
Alignment:
Q  110 ctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttca 209  Q
    ||||||||||||||| ||||| ||||| ||||| ||||| |  |||||| | |||| ||  |||| | |||||| | | ||||||||||| |||||||      
T  9112114 ctcggcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttg 9112213  T
Q  210 attgtgctgtcaatg 224  Q
    |||||| ||||||||    
T  9112214 attgtgttgtcaatg 9112228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1835 times since January 2019
Visitors: 2394