View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0216_low_18 (Length: 204)
Name: NF0216_low_18
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 2623580 - 2623442
Alignment:
| Q |
40 |
ctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatatacatcacaaacttcaatttt |
139 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2623580 |
ctgtcgattttccagcatcaaatttaatcgaaaatccttgaaaaatcatcacattaggtctagacggatatgcaaaatatacatcacaaaattcaatttt |
2623481 |
T |
|
| Q |
140 |
tcctcttaactttttagctttgtaaccttctatttcatc |
178 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2623480 |
tcctattaactttatagctttgtgaccttctatttcatc |
2623442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 2592036 - 2591898
Alignment:
| Q |
40 |
ctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatatacatcacaaacttcaatttt |
139 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
2592036 |
ctgttgattttccggcatcaattttaatcgagaatccttcaaaaatcatcacatttggtctagacggatatgcaaaataaacatcacaaaattcaatttt |
2591937 |
T |
|
| Q |
140 |
tcctcttaactttttagctttgtaaccttctatttcatc |
178 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
2591936 |
tcctattaacttttcagctttgtaaccttctatttcatc |
2591898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 2569214 - 2569361
Alignment:
| Q |
20 |
accactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatat |
119 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| | |
|
|
| T |
2569214 |
accactttcccctaccaaagctgtcgattttccagcatcaattttaatcgagaacccttgaaaaatcatcacattaggtctagccggatatgcaaaatgt |
2569313 |
T |
|
| Q |
120 |
acatcacaaacttcaatttttcctcttaactttttagctttgtaacct |
167 |
Q |
| |
|
|||||| ||| ||||||| ||||| |||| |||| ||||||||||||| |
|
|
| T |
2569314 |
acatcaaaaagttcaattattcctattaatttttcagctttgtaacct |
2569361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 2672589 - 2672740
Alignment:
| Q |
20 |
accactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatat |
119 |
Q |
| |
|
|||||||||||| | |||| | || |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||| |
|
|
| T |
2672589 |
accactttcccctaccaaagccgttgattttcctgcatcaattttaatcgagaatccttgaaaaatcataacattaggtctagctggatatgaaaaatat |
2672688 |
T |
|
| Q |
120 |
acatcacaaacttcaatttttcctcttaactttttagctttgtaaccttcta |
171 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||| ||||| ||||| ||||| |
|
|
| T |
2672689 |
acatcacgaagttcaatttttcctattaacttttcagcttggtaactttcta |
2672740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 2596773 - 2596924
Alignment:
| Q |
20 |
accactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatat |
119 |
Q |
| |
|
|||||||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||||||| |
|
|
| T |
2596773 |
accactttcccctaccaaagccgtcgattttcctgcatcaattttaatcgagaacccttgaaaaattgtaacattaggtctacctggatatgcaaaatat |
2596872 |
T |
|
| Q |
120 |
acatcacaaacttcaatttttcctcttaactttttagctttgtaaccttcta |
171 |
Q |
| |
|
||||||| || ||||||||||||| |||| |||| |||| |||||||||||| |
|
|
| T |
2596873 |
acatcacgaagttcaatttttcctattaatttttcagctctgtaaccttcta |
2596924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 2641429 - 2641578
Alignment:
| Q |
20 |
accactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatat |
119 |
Q |
| |
|
|||||||||||| | |||| | |||||||||||||| || |||||||| ||||| |||||||| |||||||||||| ||||| |||||||||||||| | |
|
|
| T |
2641429 |
accactttccccgaccaaagccgtcgattttccagcgtcgattttaattgagaacccttgaaagatcatcacattaggtctacccggatatgcaaaatct |
2641528 |
T |
|
| Q |
120 |
acatcacaaacttcaatttttcctcttaactttttagctttgtaaccttc |
169 |
Q |
| |
|
|||||| || ||||||||| ||| | || ||||| |||||||||||||| |
|
|
| T |
2641529 |
acatcaagaagttcaattttccctatcaaatttttggctttgtaaccttc |
2641578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 2450835 - 2450686
Alignment:
| Q |
20 |
accactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatat |
119 |
Q |
| |
|
|||||||||||| | |||| | || ||||| || ||| ||||||||||||||| |||||||| || || ||||| | ||||||||||||||||||| | |
|
|
| T |
2450835 |
accactttccccgaccaaagccgttgatttaccgacattaattttaatcgagaacccttgaaagatgattgcattaggcctagacggatatgcaaaatgt |
2450736 |
T |
|
| Q |
120 |
acatcacaaacttcaatttttcctcttaactttttagctttgtaaccttc |
169 |
Q |
| |
|
|||||| || ||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
2450735 |
acatcatgaaattcaatttttcctatcaacttttctactttgtaaccttc |
2450686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 2440110 - 2439959
Alignment:
| Q |
20 |
accactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattatgtctagacggatatgcaaaatat |
119 |
Q |
| |
|
|||||||||||| | |||| | || |||||||| || ||||||| ||| ||||| |||||||| | |||||||||| | |||| |||||||| ||||| | |
|
|
| T |
2440110 |
accactttccccaaccaaagccgttgattttccggcgtcaatttcaatagagaacccttgaaagaccatcacattaggcctagccggatatgaaaaatgt |
2440011 |
T |
|
| Q |
120 |
acatcacaaacttcaatttttcctcttaactttttagctttgtaaccttcta |
171 |
Q |
| |
|
|| ||| || | ||||||||||| | ||||||| |||| || ||||||||| |
|
|
| T |
2440010 |
acgtcatgaaatacaatttttcctatcaacttttcagctctgaaaccttcta |
2439959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2370 times since January 2019
Visitors: 2400