View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0216_low_2 (Length: 547)
Name: NF0216_low_2
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 386
Target Start/End: Original strand, 40360161 - 40360521
Alignment:
| Q |
30 |
tgtttcactttcaacaatctgaggtacctatttgaaacaaagaacaatgttagtctttagatgggagtttggttttatcgaatatttattgtgactgcaa |
129 |
Q |
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| T |
40360161 |
tgtttcactttcaacaatctcaggtacctatttgaaacaaggaacaatgttagtctttagatgggagtttggttttatcgaatatttattgtgactgcaa |
40360260 |
T |
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| Q |
130 |
taattgcggttgtggattgcaatttaaaacaagattttaatagaaagtt----gattacctcgtttgagatttttgttttccttgctgcaacactttgaa |
225 |
Q |
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| T |
40360261 |
taattgcggttgtggattgcaatttaaaacaatattttaagagaaagttaattgattacctcgtttgagatttttgttttccttgctgcaacactttgaa |
40360360 |
T |
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| Q |
226 |
caacactgtcagcactacgtgatttttggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttccttccttgtatcagcttcggtgca |
325 |
Q |
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| T |
40360361 |
caacactgtcagcactacgtgatttttggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttccttccttgtatcagcttcggtgca |
40360460 |
T |
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| Q |
326 |
ataaattctgaaactcggagatccttggtataaaaatcttccgacttcgtcgtcgtcgtcg |
386 |
Q |
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| T |
40360461 |
ataaattctgaaactcggagatccttggtataaaaatcttccaacttcatcgtcgtcgtcg |
40360521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 538
Target Start/End: Original strand, 40360641 - 40360682
Alignment:
| Q |
497 |
cactgtccctttaatgtttccctcctctgttttggtctctgc |
538 |
Q |
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| T |
40360641 |
cactgtcccttcaatatttccctcctctgttttggtctctgc |
40360682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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