View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0216_low_6 (Length: 350)
Name: NF0216_low_6
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0216_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 5160104 - 5160420
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160104 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
5160203 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5160204 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatttggatatatcaaa |
5160303 |
T |
|
| Q |
204 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatatacct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160304 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatatacct |
5160403 |
T |
|
| Q |
304 |
tcatcaattggtaagat |
320 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5160404 |
tcatcaattggtaagat |
5160420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 5182349 - 5182665
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
5182349 |
aagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctacttttctttcatatcaat |
5182448 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaa |
203 |
Q |
| |
|
| |||||||| || ||||||| ||| ||||||| ||||||| |||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5182449 |
ataatttgatattcttggacctctccagaaacaatttagttggttcattcccaagttggttgatagataatcataacatgaattatttggatatatcaaa |
5182548 |
T |
|
| Q |
204 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatatacct |
303 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182549 |
caacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatatacct |
5182648 |
T |
|
| Q |
304 |
tcatcaattggtaagat |
320 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5182649 |
tcatcaattggtaagat |
5182665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 4856982 - 4856686
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4856982 |
aagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatcaat |
4856883 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaa |
203 |
Q |
| |
|
| |||||| | || ||||||| ||| ||||||| ||||||| |||| |||||||| ||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
4856882 |
ataatttggtattcttggacctctccagaaacaatttagttggttcattcccaagttcgttgatagataatcataacatgaattatttggatatatcaaa |
4856783 |
T |
|
| Q |
204 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatata |
300 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| ||| | |||||||||| |||| ||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4856782 |
caacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 5173020 - 5173330
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173020 |
aagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
5173119 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaa |
203 |
Q |
| |
|
| |||||||| || ||||||| || | ||||| || ||||||||| |||||||||||||||| ||||| || ||| | ||| ||||| ||||||| |
|
|
| T |
5173120 |
ataatttgatactgatggacctctctagcaacaatattgttggctcactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaa |
5173219 |
T |
|
| Q |
204 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatatacct |
303 |
Q |
| |
|
||||||||| ||||| ||||| || || ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173220 |
caacaattttagtggtttgcttccagaa------gatatattccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatatacct |
5173313 |
T |
|
| Q |
304 |
tcatcaattggtaagat |
320 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5173314 |
tcatcaattggtaagat |
5173330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 5195746 - 5196065
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5195746 |
aagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctacttttctttcatatcaat |
5195845 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaag---ttggttgatacataatcataacattaattatatggatatatc |
200 |
Q |
| |
|
| |||||| | | ||| ||| ||| | ||||| ||| ||||||| |||||| |||||||||||||||| || |||| | ||| |||||||||| |
|
|
| T |
5195846 |
ataatttggtatacttggtcctctccagcaacaatataaatggctcactcccaagtaattggttgatacataatgatgacatgatatatttggatatatc |
5195945 |
T |
|
| Q |
201 |
aaacaacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatata |
300 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||| | | | |||||||||| | || ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195946 |
aaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatata |
5196045 |
T |
|
| Q |
301 |
ccttcatcaattggtaagat |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5196046 |
ccttcatcaattggtaagat |
5196065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 4842505 - 4842192
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842505 |
aagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaat |
4842406 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaa |
203 |
Q |
| |
|
| |||||||| || ||||||| || | ||||| | |||||||| |||||||||||||||| ||||| | ||| | ||| ||||| ||||||| |
|
|
| T |
4842405 |
ataatttgatagtgatggacctctctagcaacaata---ttggctcactcccaagttggttgataaataatgttggcatacaatatttggatctatcaaa |
4842309 |
T |
|
| Q |
204 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatatacct |
303 |
Q |
| |
|
||||||||| ||||| ||||| || ||||| ||| | |||||||||| |||| ||| | |||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
4842308 |
caacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatatacct |
4842209 |
T |
|
| Q |
304 |
tcatcaattggtaagat |
320 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
4842208 |
tcatcaatttgtaagat |
4842192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 5213909 - 5214222
Alignment:
| Q |
4 |
aagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaat |
103 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5213909 |
aagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctacttttctttcatatcaat |
5214008 |
T |
|
| Q |
104 |
acaatttgatgttggtggacctttccggaaacaaaatagttggctcatccccaagttggttgatacataatcataacattaattatatggatatatcaaa |
203 |
Q |
| |
|
| | |||||| ||| ||||||| ||| | |||||| | ||||| | || |||||| ||||| |||||| | | || || ||| |||||||||||| |
|
|
| T |
5214009 |
atagtttgatattgatggacctatccagcaacaaattggttggtttattcccaagatggttcatacattcttct---atgaaatatttggatatatcaat |
5214105 |
T |
|
| Q |
204 |
caacaatttaagtgggttgctaacaaaagattttgatttattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatatacct |
303 |
Q |
| |
|
||||| ||||||||| || || |||||||| ||| | |||||||||| |||| ||| | |||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
5214106 |
caacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatatacct |
5214205 |
T |
|
| Q |
304 |
tcatcaattggtaagat |
320 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5214206 |
tcatcaattggtaagat |
5214222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 316
Target Start/End: Original strand, 7142324 - 7142598
Alignment:
| Q |
45 |
aaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgatgttggtggacctttccggaaacaaaatagtt |
144 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||| |||| |||| |||||| | |||||| || ||||||| ||| ||||||| |||||| |
|
|
| T |
7142324 |
aaattgcaaccaaaacatggacaaaggaaatgtcattcctagttttttttcatatcaacataatttggcattcttggacctctccagaaacaatatagtt |
7142423 |
T |
|
| Q |
145 |
ggctcatccccaag---ttggttgatacataatcataacattaattatatggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatt |
241 |
Q |
| |
|
|||||| |||||| |||||||||||||||| || || | || |||||||||||||||||||||||||||| ||||| || ||||| ||| | |
|
|
| T |
7142424 |
ggctcactcccaagaaattggttgatacataatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattggta |
7142523 |
T |
|
| Q |
242 |
tattccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
316 |
Q |
| |
|
|||||||||| |||| | | |||||||||||| |||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
7142524 |
tattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatataccttaatcaattggta |
7142598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 5203271 - 5203324
Alignment:
| Q |
121 |
gacctttccggaaacaaaatagttggctcatccccaagttggttgatacataat |
174 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5203271 |
gaccttaccagaaacaaaatagttggctcattcccaagttggttgatacataat |
5203324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1766 times since January 2019
Visitors: 2393