View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0216_low_8 (Length: 347)

Name: NF0216_low_8
Description: NF0216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0216_low_8
NF0216_low_8
[»] chr8 (4 HSPs)
chr8 (78-324)||(18016431-18016677)
chr8 (121-210)||(13368357-13368446)
chr8 (100-173)||(33330430-33330503)
chr8 (100-152)||(8304905-8304957)
[»] chr5 (3 HSPs)
chr5 (70-206)||(41592622-41592758)
chr5 (100-176)||(35415963-35416039)
chr5 (103-146)||(1728369-1728412)
[»] chr2 (5 HSPs)
chr2 (100-206)||(11652728-11652834)
chr2 (162-279)||(23794102-23794219)
chr2 (100-198)||(41647378-41647476)
chr2 (162-279)||(23764884-23765001)
chr2 (100-160)||(42183794-42183854)
[»] chr1 (3 HSPs)
chr1 (78-206)||(1797976-1798104)
chr1 (114-206)||(22157762-22157854)
chr1 (100-173)||(3394863-3394936)
[»] chr7 (5 HSPs)
chr7 (72-209)||(29802489-29802626)
chr7 (118-206)||(34328314-34328402)
chr7 (100-212)||(31663593-31663705)
chr7 (100-152)||(8752204-8752256)
chr7 (100-160)||(33680549-33680609)
[»] chr4 (3 HSPs)
chr4 (71-210)||(21141632-21141771)
chr4 (100-159)||(48782792-48782851)
chr4 (100-173)||(34240830-34240903)
[»] chr6 (2 HSPs)
chr6 (100-173)||(2013906-2013979)
chr6 (100-140)||(20565139-20565179)
[»] chr3 (1 HSPs)
chr3 (114-163)||(15206057-15206106)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 78 - 324
Target Start/End: Original strand, 18016431 - 18016677
Alignment:
Q  78 ttcacattcattcataaagaccatttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttac 177  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  18016431 ttcacattcattcataaagatcatttggctagcttgtgtttgggtaatctggaaggaaaggaacaactgtgtcttcaaaaatgtggcttccgatccttac 18016530  T
Q  178 gtcctccttgacaaagttaagctgaattccttcctaggctgaaaacaaatcaggtttcgttcactcattgttatcatgacgggtggcgacatccgcttct 277  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  18016531 gtcctccttgacaaagttaagttgaattccttcctaggctgaaaacaaatcaggtttcgttcacttattgttatcatgactggtggcgacatccgcttct 18016630  T
Q  278 ttacatgagggtttacgtgcaatccctttttggtttttgctttgatg 324  Q
    ||||||||||||||| |||||||||||||| | ||||||||||||||    
T  18016631 ttacatgagggtttatgtgcaatcccttttggctttttgctttgatg 18016677  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 13368357 - 13368446
Alignment:
Q  121 gtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagctgaattccttc 210  Q
    ||||| ||||| |||||||||||||||||||| |||| || ||||||| ||| | || || ||||||| |||||||||||||||||||||    
T  13368357 gtaatttggaaggaaaggaacaaccgtgtctttaaaagtgcggcttcccatcttcacatcatccttgaaaaagttaagctgaattccttc 13368446  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 33330430 - 33330503
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 173  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||| |  | |||||||||||||| || |||||    
T  33330430 atttggcttgcttgtgtttgggtaatatggaaagaaagaaataactgcatattaaaaaatgtggcatctgatcc 33330503  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 8304957 - 8304905
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtctt 152  Q
    |||||||| ||||||||||||| ||| ||||| || || ||||||||||||||    
T  8304957 atttggcttgcttgtgtttgggcaatatggaaggagagaaacaaccgtgtctt 8304905  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 41592622 - 41592758
Alignment:
Q  70 ccgcgattttcacattcattcataaagaccatttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccg 169  Q
    ||||||| ||||||||||| | | |||   |||||| | |||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  41592622 ccgcgatcttcacattcatccttcaaggtaatttgggttgcttgtgtatgagtaatttggaaagaaagaaacaaccgtgtcttcaaaaatgtggcttccg 41592721  T
Q  170 atccttacgtcctccttgacaaagttaagctgaattc 206  Q
    ||| ||| | ||||||||| |||||||||||||||||    
T  41592722 atcattatgccctccttgataaagttaagctgaattc 41592758  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 35415963 - 35416039
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcctta 176  Q
    |||||||| |||||||| |||| ||| |  ||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  35415963 atttggcttgcttgtgtgtgggcaatttaaaaagaaaggaacaaccgcgtcttcaaaaatgtggcttccgattctta 35416039  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 1728412 - 1728369
Alignment:
Q  103 tggctagcttgtgtttgggtaatctggaaagaaaggaacaaccg 146  Q
    |||||||| | |||||||||||| ||||||||||||||||||||    
T  1728412 tggctagcgtctgtttgggtaatatggaaagaaaggaacaaccg 1728369  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 11652728 - 11652834
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 199  Q
    |||||||| |||||||| |||||||| ||||||||||||||  ||||||| ||||||||| |||||||||||||||  |  ||| |||| ||||||||||    
T  11652728 atttggcttgcttgtgtgtgggtaatttggaaagaaaggaatgaccgtgttttaaaaaatatggcttccgatccttttgctctcattgataaagttaagc 11652827  T
Q  200 tgaattc 206  Q
    | |||||    
T  11652828 ttaattc 11652834  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 23794219 - 23794102
Alignment:
Q  162 ggcttccgatccttacgtcctccttgacaaagttaagctgaattccttccta-ggctgaaaacaaatcaggtttcgttcactcattgttatcatgacggg 260  Q
    |||||||||| |||||| | ||||||||||||||||||| ||||||||  || || ||||||||||||||||| ||||| |  | | |||||||||| ||    
T  23794219 ggcttccgattcttacg-cttccttgacaaagttaagcttaattcctttttatggttgaaaacaaatcaggttacgttctcgtactattatcatgactgg 23794121  T
Q  261 tggcgacatccgcttcttt 279  Q
    || ||||| ||||||||||    
T  23794120 tgtcgacacccgcttcttt 23794102  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 41647476 - 41647378
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaag 198  Q
    |||||| | ||||||| ||||||||| ||||| |||||||||||||| ||||||||||||| | |||| |||||| ||   |||||||| |||||||||    
T  41647476 atttggttggcttgtgcttgggtaatatggaaggaaaggaacaaccgcgtcttaaaaaatgcgacttctgatcctcacaatctccttgaaaaagttaag 41647378  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 23765001 - 23764884
Alignment:
Q  162 ggcttccgatccttacgtcctccttgacaaagttaagctgaattccttccta-ggctgaaaacaaatcaggtttcgttcactcattgttatcatgacggg 260  Q
    |||||||||| |||||| | ||||||||||||||||||| ||||||||  || || ||||||||||||||||| ||||| |  | | |||||||||| ||    
T  23765001 ggcttccgattcttacg-cttccttgacaaagttaagcttaattcctttttatggttgaaaacaaatcaggttacgttctcgtactattatcatgactgg 23764903  T
Q  261 tggcgacatccgcttcttt 279  Q
    || ||||| | ||||||||    
T  23764902 tgtcgacacctgcttcttt 23764884  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 42183794 - 42183854
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatg 160  Q
    |||||||| ||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||    
T  42183794 atttggcttgcttgtgcttgggtaatatggaaggaaaggaacaatcgtgtcttcaaaaatg 42183854  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 1798104 - 1797976
Alignment:
Q  78 ttcacattcattcataaagaccatttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttac 177  Q
    ||||||||||||| | |||   |||||||| |||||||| |||||||| ||||||||||||||  || |||| || || |||||||||||| ||||||      
T  1798104 ttcacattcattcttcaaggtaatttggcttgcttgtgtgtgggtaatttggaaagaaaggaatgactgtgttttcaacaatgtggcttccaatcctttt 1798005  T
Q  178 gtcctccttgacaaagttaagctgaattc 206  Q
    |  ||| |||| |||||||||||||||||    
T  1798004 gctctcattgataaagttaagctgaattc 1797976  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 22157854 - 22157762
Alignment:
Q  114 tgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagctgaattc 206  Q
    ||||||||| || ||||| |||||||||||||||||||| || |||| |||||   |||||| ||| ||||| || |||||||| || |||||    
T  22157854 tgtttgggtgatttggaaggaaaggaacaaccgtgtcttcaacaatggggctttgaatccttccgtgctcctagaaaaagttaaacttaattc 22157762  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 3394863 - 3394936
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 173  Q
    |||||||| ||||  ||||||||||| || |||||||| || |||||  |||| |||||||||| |||||||||    
T  3394863 atttggcttgctttagtttgggtaatttgaaaagaaagaaataaccgcatcttcaaaaatgtggtttccgatcc 3394936  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 29802489 - 29802626
Alignment:
Q  72 gcgattttcacattcattcataaagaccatttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgat 171  Q
    ||||||||||||||| ||  |||||   |||||||| ||||||  ||||||||| ||||| ||||||||||||||||||||| |||||  | |  |||||    
T  29802489 gcgattttcacattcttttctaaaggtaatttggcttgcttgtacttgggtaatatggaaggaaaggaacaaccgtgtcttacaaaatacgacaaccgat 29802588  T
Q  172 ccttacgtcctccttgacaaagttaagctgaattcctt 209  Q
    |||||    ||| |||| ||||||||| ||||||||||    
T  29802589 ccttatactctcattgataaagttaagttgaattcctt 29802626  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 34328402 - 34328314
Alignment:
Q  118 tgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagctgaattc 206  Q
    |||||||| || ||||||||||||||||| |||||  ||||   || |||| ||||||| | ||||||||| |||||||||||||||||    
T  34328402 tgggtaatttgaaaagaaaggaacaaccgcgtcttctaaaaaaaggtttccaatccttatgccctccttgataaagttaagctgaattc 34328314  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 31663705 - 31663593
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 199  Q
    |||||||| |||||||| ||||||||||||||||| |||||  ||||| | || ||  | |||||||| ||||||   |  ||| |||| ||||||||||    
T  31663705 atttggcttgcttgtgtgtgggtaatctggaaagagaggaatgaccgtattttcaactacgtggcttctgatcctgttgctctcattgataaagttaagc 31663606  T
Q  200 tgaattccttcct 212  Q
    ||||||| |||||    
T  31663605 tgaattcgttcct 31663593  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 8752204 - 8752256
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtctt 152  Q
    |||||||| ||||||||||||| ||| |||||||| || |||||||| |||||    
T  8752204 atttggcttgcttgtgtttgggcaatttggaaagagagaaacaaccgagtctt 8752256  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 33680549 - 33680609
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatg 160  Q
    |||||||| |||||||| ||||| || || |||||| | ||||||||| ||||||||||||    
T  33680549 atttggcttgcttgtgtgtgggttatatgaaaagaacgtaacaaccgtatcttaaaaaatg 33680609  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 21141632 - 21141771
Alignment:
Q  71 cgcgattttcacattcattcataaagaccatttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccga 170  Q
    |||||| |||||||||||   |||||   |||||||| | ||||||||||| ||| ||||| |||| ||||||||| ||||| ||||||||||   ||||    
T  21141632 cgcgatcttcacattcatctttaaaggttatttggcttgattgtgtttgggcaatatggaaggaaaagaacaaccgcgtcttgaaaaatgtggtaaccga 21141731  T
Q  171 tccttacgtcctccttgacaaagttaagctgaattccttc 210  Q
    |||| ||  | || |||| ||||||||||| |||||||||    
T  21141732 tcctcacaacatcattgaaaaagttaagctaaattccttc 21141771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 48782851 - 48782792
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaat 159  Q
    |||||| | ||||||| |||| |||| ||||| |||||||||||||||||||| ||||||    
T  48782851 atttggtttgcttgtgcttggataatatggaaggaaaggaacaaccgtgtcttcaaaaat 48782792  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 34240903 - 34240830
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 173  Q
    ||||||||||||||||| |||| ||| |||||||||  |||  ||| |||||| | ||| ||||||||||||||    
T  34240903 atttggctagcttgtgtgtgggcaatttggaaagaacagaatgaccatgtcttcacaaacgtggcttccgatcc 34240830  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 2013906 - 2013979
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 173  Q
    |||||||| | ||||||||||||||| ||||||||||| ||| | |   |||| |||||||||||||| |||||    
T  2013906 atttggctcgtttgtgtttgggtaatatggaaagaaagaaacgatcacatctttaaaaatgtggcttcagatcc 2013979  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 20565179 - 20565139
Alignment:
Q  100 atttggctagcttgtgtttgggtaatctggaaagaaaggaa 140  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  20565179 atttggctagcttgtgtttgggtaatttggaaggagaggaa 20565139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 15206057 - 15206106
Alignment:
Q  114 tgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtgg 163  Q
    ||||||||| || ||||| |||||||||||||||||||| || |||||||    
T  15206057 tgtttgggtgatttggaaggaaaggaacaaccgtgtcttcaacaatgtgg 15206106  T

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