View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase12 (Length: 440)
Name: NF0217Ase12
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase12 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Complemental strand, 10984176 - 10983751
Alignment:
| Q |
9 |
tatcaaggtttatctttccatattctatctttgtaacagacaaccatgtgattattccaagaacacaaccaaatactgttccaagaattgctccaattgc |
108 |
Q |
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| T |
10984176 |
tatcaaggtttatctttccatattctatctttgtaacagacaaccatgtgattattccaagaacacaaccaaatactgttccaagaattgctccaattgc |
10984077 |
T |
|
| Q |
109 |
atttgcttttctccatagaagcatgaaagcaataggaataactgctgaaccgatcaaaactcccattgcaaggtacatccatcctaaagagactcctgct |
208 |
Q |
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| T |
10984076 |
atttgcttttctccatagaagcatgaaagcaataggaataactgctgaaccgatcaaaactcccattgcaaggtacatccatcctaaagagactcctgct |
10983977 |
T |
|
| Q |
209 |
ttgtttagtataactgctaacagtcccatgaaacatccaaaccctaggacaaccatccttgatactctgaggattttctttccacttgcattagggttta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10983976 |
ttgtttagtataactgctaacagtcccatgaaacatccaaaccctaggacaaccatccttgatactctgaggattttctttccacttgcattagggttta |
10983877 |
T |
|
| Q |
309 |
tgtaagttctgtagatatcatatgtgcataatgaggacacggcaattagctctgatgaaccagcagaagtcactgccctgataataagtatattaaaatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10983876 |
tgtaagttctgtagatatcatatgtgcataatgaggacacggcaattagctctgatgaaccagcagaagtcactgccctgataataagtatattaaaatc |
10983777 |
T |
|
| Q |
409 |
atcaggaaaaagaataataattatta |
434 |
Q |
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| T |
10983776 |
atcatgaaaaagaataataattatta |
10983751 |
T |
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