View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0217Ase17 (Length: 375)
Name: NF0217Ase17
Description: NF0217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0217Ase17 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 37619507 - 37619146
Alignment:
| Q |
8 |
gtttaagaggtgcccttagggcacaagttagcatgaccttttatttattgattgattttcagtattcgcgattttattagtagggatcaaagtgataccg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
37619507 |
gtttaagaggtgcccttagggcacaagttagcatgaccttttatttattgattgattttcagtattcacgatttttttagtagggatcaaagtgataccg |
37619408 |
T |
|
| Q |
108 |
ttgaagttcctaagtcatcccatagtcgaagaatttcgccggagcaagtgaagagtctgggatatgacttcatcattatggacatagtttcctttgagag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37619407 |
ttgaagttcctaagtcatcccatagtcgaagaatttcgccggagcaagtgaagagtctgggatatgacttcatcattatggacatagtttcctttgagag |
37619308 |
T |
|
| Q |
208 |
accatcaccaatgaggaaagtagcatgcaccaaggccatgcatgatccagcagaaattactccattatccaaatatgtcttaaaatttggcacacatcca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37619307 |
accatcaccaatgaggaaagtagcatgcaccaaggccatgcatgatccagcagaaattactccattatccaaatatgtcttaaaatttggcacacatcca |
37619208 |
T |
|
| Q |
308 |
ttattgaaccatttggcttcttcaagaaatgcttcaaatatgtcaatccactgcacaaatta |
369 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37619207 |
ttattgaaccatttggcttcttcaagaaatgcttcaaatatgtcaatccactgcacaaatta |
37619146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 101 - 369
Target Start/End: Complemental strand, 37627820 - 37627555
Alignment:
| Q |
101 |
gataccgttgaagttcctaagtcatcccatagtcgaagaatttcgccggagcaagtgaagagtctgggatatgacttcatcattatggacatagtttcct |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || || |||| ||| ||||| |||||| ||||||||| ||| |||||||||| |
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| T |
37627820 |
gataccgttgaagttcccaagtcatcccatagtcgaagaatttctcctgaacaagagaatagtctaggatattgcttcatcat---ggaaatagtttcct |
37627724 |
T |
|
| Q |
201 |
ttgagagaccatcaccaatgaggaaagtagcatgcaccaaggccatgcatgatccagcagaaattactccattatccaaatatgtcttaaaatttggcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| || |||||||||||||| ||||||||| ||||||| |
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| T |
37627723 |
ttgagagaccatcaccaatgaggaaagtagaatgcaccaatgccatgcatgatccaaccgaaatcaccccattatccaaatacgtcttaaaacttggcac |
37627624 |
T |
|
| Q |
301 |
acatccattattgaaccatttggcttcttcaagaaatgcttcaaatatgtcaatccactgcacaaatta |
369 |
Q |
| |
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| |||| ||||||||||||| |||||||| ||| |||| ||||| ||||| ||||||||||| ||||| |
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|
| T |
37627623 |
atatccgctattgaaccatttcgcttcttccagatatgcgtcaaacatgtccatccactgcaccaatta |
37627555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 7509662 - 7509625
Alignment:
| Q |
17 |
gtgcccttagggcacaagttagcatgaccttttattta |
54 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
7509662 |
gtgcccttagggcacaagttagcatgacccttttttta |
7509625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 43351970 - 43351942
Alignment:
| Q |
17 |
gtgcccttagggcacaagttagcatgacc |
45 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
43351970 |
gtgcccttagggcacaagttagcatgacc |
43351942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 32786931 - 32786959
Alignment:
| Q |
17 |
gtgcccttagggcacaagttagcatgacc |
45 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
32786931 |
gtgcccttagggcacaagttagcatgacc |
32786959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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